Variant report

Variant	rs9403140
Chromosome Location	chr6:140383495-140383496
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139692663..139698708-chr6:140381231..140386402,5	MCF-7	breast:
2	chr6:139695333..139696910-chr6:140382949..140384930,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7751165	0.80[AMR][1000 genomes]
rs7763294	0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3473486	chr6:140380637-140392373	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
6	esv3473487	chr6:140380684-140392349	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
7	esv3473488	chr6:140380690-140392319	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
8	esv3473489	chr6:140380774-140392251	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140373600-140384200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:140374200-140383800	Weak transcription	Fetal Brain Female	brain
3	chr6:140375000-140383800	Weak transcription	Brain Germinal Matrix	brain
4	chr6:140379400-140383600	Enhancers	Hela-S3	cervix
5	chr6:140379800-140385200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:140380000-140385200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:140380000-140385800	Enhancers	NHDF-Ad	bronchial
8	chr6:140380400-140383800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:140380600-140386400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:140380800-140385000	Enhancers	NHLF	lung
11	chr6:140381000-140384600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:140381000-140385200	Enhancers	HSMM	muscle
13	chr6:140381200-140385800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr6:140381800-140385000	Enhancers	Osteobl	bone
15	chr6:140382000-140384400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:140382000-140384600	Enhancers	NHEK	skin
17	chr6:140382200-140384000	Enhancers	HSMMtube	muscle
18	chr6:140382200-140384400	Enhancers	Placenta	Placenta
19	chr6:140382200-140384600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:140382200-140384600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:140382200-140384600	Enhancers	Fetal Lung	lung
22	chr6:140382400-140384800	Enhancers	Adipose Nuclei	Adipose
23	chr6:140382400-140386400	Enhancers	Placenta Amnion	Placenta Amnion
24	chr6:140382600-140384200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr6:140382600-140384400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:140382600-140384800	Enhancers	Fetal Heart	heart
27	chr6:140382800-140384000	Enhancers	Colon Smooth Muscle	Colon
28	chr6:140383000-140384000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:140383000-140384000	Enhancers	Stomach Smooth Muscle	stomach
30	chr6:140383000-140384200	Enhancers	Fetal Muscle Leg	muscle
31	chr6:140383000-140384200	Enhancers	HUVEC	blood vessel
32	chr6:140383000-140384400	Enhancers	Fetal Stomach	stomach
33	chr6:140383000-140384600	Enhancers	Fetal Intestine Large	intestine
34	chr6:140383000-140384600	Enhancers	Fetal Kidney	kidney
35	chr6:140383200-140383600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:140383200-140383600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:140383200-140383600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr6:140383200-140383600	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr6:140383200-140383600	Active TSS	NH-A	brain
40	chr6:140383200-140383800	Weak transcription	Aorta	Aorta
41	chr6:140383200-140383800	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr6:140383200-140384000	Weak transcription	Psoas Muscle	Psoas
43	chr6:140383200-140384600	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr6:140383200-140384600	Enhancers	Rectal Smooth Muscle	rectum
45	chr6:140383200-140385600	Weak transcription	Ovary	ovary
46	chr6:140383400-140383800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:140383400-140383800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:140383400-140383800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr6:140383400-140383800	Flanking Active TSS	A549	lung
50	chr6:140383400-140383800	Flanking Active TSS	HMEC	breast

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