Variant report

Variant	rs9403386
Chromosome Location	chr6:142764073-142764074
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:142763089..142766069-chr6:142766128..142768909,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10484733	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11155242	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11759653	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12189838	1.00[ASN][1000 genomes]
rs12190271	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12197866	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12213892	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13198644	1.00[ASN][1000 genomes]
rs1329705	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1329707	0.98[ASN][1000 genomes]
rs17071756	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17280293	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs1928528	1.00[ASN][1000 genomes]
rs2294775	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs262117	0.84[ASN][1000 genomes]
rs3817928	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4304190	1.00[ASN][1000 genomes]
rs6570511	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6900087	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6900233	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6901807	1.00[ASN][1000 genomes]
rs6903424	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6906468	1.00[ASN][1000 genomes]
rs6912639	1.00[ASN][1000 genomes]
rs6922607	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6925979	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs73780219	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73780221	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7756434	1.00[ASN][1000 genomes]
rs7757571	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7765770	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7776356	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv3429097	chr6:142762259-142765357	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	esv3449614	chr6:142762709-142765207	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142735200-142765400	Weak transcription	Hela-S3	cervix
2	chr6:142735800-142765400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:142737600-142765600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:142737800-142765800	Weak transcription	Fetal Brain Male	brain
5	chr6:142738000-142774200	Weak transcription	NHEK	skin
6	chr6:142739000-142764800	Weak transcription	NHLF	lung
7	chr6:142743200-142769200	Weak transcription	HMEC	breast
8	chr6:142748000-142782600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:142749200-142764600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:142750000-142766000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:142751600-142780000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:142752400-142774600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:142753600-142774000	Strong transcription	Liver	Liver
14	chr6:142754000-142772800	Strong transcription	HepG2	liver
15	chr6:142755200-142765800	Weak transcription	Fetal Intestine Small	intestine
16	chr6:142755200-142766000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:142756400-142764400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr6:142757200-142765400	Weak transcription	Fetal Intestine Large	intestine
19	chr6:142757200-142765400	Weak transcription	Fetal Stomach	stomach
20	chr6:142760000-142770600	Weak transcription	Lung	lung
21	chr6:142760400-142767800	Weak transcription	Esophagus	oesophagus
22	chr6:142760600-142765400	Weak transcription	HSMM	muscle
23	chr6:142760600-142765800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:142760800-142765400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:142762000-142765400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:142762200-142764200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:142762200-142765400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:142762200-142773000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:142762400-142766000	Weak transcription	HUVEC	blood vessel
30	chr6:142762600-142765400	Weak transcription	Placenta	Placenta
31	chr6:142762800-142765800	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr6:142762800-142766800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:142763200-142764200	Weak transcription	Fetal Lung	lung
34	chr6:142763200-142764400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:142763200-142764400	Weak transcription	A549	lung
36	chr6:142763200-142765400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr6:142763200-142765800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr6:142763200-142765800	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr6:142763200-142765800	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr6:142763200-142765800	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr6:142763200-142765800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr6:142763200-142766000	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr6:142763200-142766000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:142763400-142765600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr6:142764000-142766400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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