Variant report

Variant	rs17280293
Chromosome Location	chr6:142688969-142688970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:142687131..142689757-chr6:142689967..142691514,2	MCF-7	breast:
2	chr6:142686552..142689660-chr6:142691331..142695100,3	MCF-7	breast:
3	chr6:142621406..142625298-chr6:142688620..142694485,6	MCF-7	breast:
4	chr6:142666001..142668001-chr6:142687415..142689537,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112414	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73780219	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73780221	0.89[EUR][1000 genomes]
rs9403386	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142679400-142693200	Weak transcription	Hela-S3	cervix
2	chr6:142681000-142695200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:142682600-142694600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:142682800-142693600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:142682800-142694600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:142683200-142693400	Weak transcription	HSMM	muscle
7	chr6:142683400-142693800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:142683600-142693200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:142683800-142691400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:142683800-142693200	Weak transcription	HMEC	breast
11	chr6:142683800-142693400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:142683800-142693400	Weak transcription	Fetal Intestine Large	intestine
13	chr6:142683800-142693400	Weak transcription	Fetal Intestine Small	intestine
14	chr6:142683800-142693600	Weak transcription	Placenta	Placenta
15	chr6:142684000-142689400	Weak transcription	Liver	Liver
16	chr6:142684000-142691400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:142688600-142689000	Enhancers	Fetal Brain Male	brain
18	chr6:142688600-142689000	Enhancers	Left Ventricle	heart
19	chr6:142688600-142689000	Flanking Active TSS	NHLF	lung
20	chr6:142688600-142689200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:142688600-142689200	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr6:142688600-142689200	Enhancers	Fetal Heart	heart
23	chr6:142688600-142689200	Flanking Active TSS	Fetal Lung	lung
24	chr6:142688600-142689200	Genic enhancers	HepG2	liver
25	chr6:142688600-142689400	Flanking Active TSS	A549	lung
26	chr6:142688800-142689000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:142688800-142689000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:142688800-142689200	Enhancers	Fetal Brain Female	brain
29	chr6:142688800-142689200	Active TSS	Stomach Smooth Muscle	stomach
30	chr6:142688800-142689600	Strong transcription	HUVEC	blood vessel
31	chr6:142688800-142693600	Weak transcription	Osteobl	bone

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