Variant report

Variant	rs9403689
Chromosome Location	chr6:145635335-145635336
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11155411	0.86[ASN][1000 genomes]
rs6937620	1.00[ASN][1000 genomes]
rs9373451	0.86[ASN][1000 genomes]
rs9373452	0.86[ASN][1000 genomes]
rs9373453	1.00[ASN][1000 genomes]
rs9376915	0.86[ASN][1000 genomes]
rs9376917	1.00[ASN][1000 genomes]
rs9386111	0.96[ASN][1000 genomes]
rs9403688	1.00[ASN][1000 genomes]
rs9484967	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145632000-145637200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:145632800-145636800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:145634000-145645000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:145634400-145637400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:145634600-145635400	Enhancers	Stomach Mucosa	stomach
6	chr6:145635000-145635600	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr6:145635200-145636000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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