Variant report

Variant	rs9404129
Chromosome Location	chr6:102163043-102163044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10485275	1.00[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.97[ASN][1000 genomes]
rs1222955	0.81[GIH][hapmap]
rs1415483	0.81[GIH][hapmap]
rs17062378	1.00[CHB][hapmap];0.89[JPT][hapmap];0.98[ASN][1000 genomes]
rs2210967	0.87[ASN][1000 genomes]
rs6907727	0.83[GIH][hapmap]
rs72956316	0.94[ASN][1000 genomes]
rs73510682	0.89[ASN][1000 genomes]
rs73764508	0.89[ASN][1000 genomes]
rs7739084	0.86[GIH][hapmap]
rs9377291	0.94[CHB][hapmap];0.85[JPT][hapmap];0.94[ASN][1000 genomes]
rs9390766	0.83[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv463993	chr6:102084491-102165329	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604317	chr6:102084491-102165329	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1016167	chr6:102152010-102198914	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102155200-102170600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:102158200-102163200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:102158200-102164400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:102160800-102164600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:102161400-102163200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:102161400-102164600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:102162000-102164600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:102162000-102164600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr6:102162400-102163200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:102163000-102163400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
11	chr6:102163000-102164200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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