Variant report

Variant	rs1222955
Chromosome Location	chr6:102165329-102165330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10485275	0.87[GIH][hapmap];0.89[TSI][hapmap]
rs1222953	1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs1222958	0.83[CHB][hapmap]
rs1415485	0.81[CHB][hapmap];0.83[ASN][1000 genomes]
rs17062395	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2518303	0.81[GIH][hapmap]
rs61090963	0.88[ASN][1000 genomes]
rs6907727	0.90[GIH][hapmap]
rs9390768	0.81[CHB][hapmap]
rs9404129	0.81[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv463993	chr6:102084491-102165329	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604317	chr6:102084491-102165329	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1016167	chr6:102152010-102198914	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102155200-102170600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:102163200-102165600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr6:102164000-102166400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:102164000-102166400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:102164200-102165400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr6:102164600-102166400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:102164600-102167200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:102164800-102168000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:102165000-102165400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:102165000-102165400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr6:102165000-102165600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr6:102165000-102167600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr6:102165200-102165600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:102165200-102165600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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