Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10485273	0.82[CHB][hapmap]
rs10872738	0.83[CHB][hapmap]
rs1222953	0.83[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1222955	0.81[CHB][hapmap];0.83[ASN][1000 genomes]
rs1337424	0.87[CHB][hapmap]
rs1415489	0.82[CHB][hapmap]
rs17062395	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs1832293	0.81[CHB][hapmap]
rs2065938	0.82[CHB][hapmap]
rs2518303	0.82[CHB][hapmap]
rs2786251	0.82[CHB][hapmap]
rs2786254	0.82[CHB][hapmap]
rs4839800	0.82[CHB][hapmap]
rs61090963	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6904687	0.89[CHB][hapmap]
rs6907727	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6923409	0.86[CHB][hapmap]
rs7739084	0.81[CEU][hapmap]
rs9322602	0.83[CHB][hapmap]
rs9322603	0.83[CHB][hapmap]
rs9390766	0.81[CEU][hapmap]
rs9390768	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9485530	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538392	chr6:101938381-102148360	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv463993	chr6:102084491-102165329	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604317	chr6:102084491-102165329	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv527973	chr6:102114780-102119829	Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102114600-102121600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:102116200-102118800	Enhancers	Pancreatic Islets	Pancreatic Islet

Quick Search: