Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10485273	0.82[CHB][hapmap]
rs10872738	0.83[CHB][hapmap]
rs1222953	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1222955	0.81[CHB][hapmap];0.87[ASN][1000 genomes]
rs1337424	0.87[CHB][hapmap]
rs1415485	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1415489	0.82[CHB][hapmap]
rs17062395	0.82[CHB][hapmap];0.87[ASN][1000 genomes]
rs1832293	0.81[CHB][hapmap]
rs2065938	0.82[CHB][hapmap]
rs2518303	0.82[CHB][hapmap]
rs2786251	0.82[CHB][hapmap]
rs2786254	0.82[CHB][hapmap]
rs4839800	0.82[CHB][hapmap]
rs61090963	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6904687	0.89[CHB][hapmap]
rs6907727	0.87[CEU][hapmap];0.87[CHB][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6923409	0.86[CHB][hapmap]
rs9322602	0.83[CHB][hapmap]
rs9322603	0.83[CHB][hapmap]
rs9390766	0.86[CEU][hapmap]
rs9485530	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538392	chr6:101938381-102148360	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv463993	chr6:102084491-102165329	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604317	chr6:102084491-102165329	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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