Variant report

Variant	rs9404620
Chromosome Location	chr6:58287821-58287822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr6:58287642-58287845	K562	blood:	n/a	n/a
2	FOXP2	chr6:58287568-58287846	SK-N-MC	brain:	n/a	n/a
3	SP2	chr6:58287376-58288068	HepG2	liver:	n/a	chr6:58287713-58287728
4	ZNF143	chr6:58287622-58287872	K562	blood:	n/a	chr6:58287789-58287799
5	CTCF	chr6:58287627-58287950	GM19238	blood:	n/a	chr6:58287791-58287807 chr6:58287792-58287805 chr6:58287790-58287808 chr6:58287792-58287805
6	CTCF	chr6:58287621-58287938	GM12891	blood:	n/a	chr6:58287791-58287807 chr6:58287792-58287805 chr6:58287790-58287808 chr6:58287792-58287805
7	POLR2A	chr6:58287155-58288262	PFSK-1	brain:	n/a	n/a
8	CTCF	chr6:58287760-58287910	GM12870	blood:	n/a	chr6:58287791-58287807 chr6:58287792-58287805 chr6:58287790-58287808 chr6:58287792-58287805
9	POLR2A	chr6:58287126-58287873	GM12878	blood:	n/a	n/a
10	TBP	chr6:58287575-58287852	H1-hESC	embryonic stem cell:	n/a	n/a
11	CTCFL	chr6:58287637-58287897	K562	blood:	n/a	chr6:58287792-58287801
12	CTCF	chr6:58287780-58287930	HFF-Myc	foreskin:	n/a	chr6:58287791-58287807 chr6:58287792-58287805 chr6:58287790-58287808 chr6:58287792-58287805
13	SP1	chr6:58287440-58288008	HepG2	liver:	n/a	n/a
14	CTCF	chr6:58287740-58287890	HMEC	breast:	n/a	chr6:58287791-58287807 chr6:58287792-58287805 chr6:58287790-58287808 chr6:58287792-58287805
15	GABPA	chr6:58287619-58288072	SK-N-SH	brain:	n/a	n/a
16	NFIC	chr6:58287482-58287990	GM12878	blood:	n/a	n/a
17	CTCF	chr6:58287760-58287910	GM12874	blood:	n/a	chr6:58287791-58287807 chr6:58287792-58287805 chr6:58287790-58287808 chr6:58287792-58287805
18	POLR2A	chr6:58287444-58287890	ECC-1	luminal epithelium:	n/a	n/a
19	ATF2	chr6:58287667-58287899	GM12878	blood:	n/a	n/a
20	EP300	chr6:58287790-58287833	GM12878	blood:	n/a	n/a
21	CTCF	chr6:58287740-58287890	MCF-7	breast:	n/a	chr6:58287791-58287807 chr6:58287792-58287805 chr6:58287790-58287808 chr6:58287792-58287805
22	CTCF	chr6:58287614-58287953	MCF-7	breast:	n/a	chr6:58287791-58287807 chr6:58287792-58287805 chr6:58287790-58287808 chr6:58287792-58287805
23	CREB1	chr6:58287533-58287896	A549	lung:	n/a	n/a
24	POLR2A	chr6:58287462-58287846	K562	blood:	n/a	n/a
25	ELF1	chr6:58287549-58287900	HepG2	liver:	n/a	n/a
26	GABPA	chr6:58287362-58287921	HepG2	liver:	n/a	n/a
27	PAX5	chr6:58287226-58287907	GM12878	blood:	n/a	n/a
28	JUND	chr6:58287496-58287855	HepG2	liver:	n/a	n/a
29	PAX5	chr6:58287451-58287884	GM12878	blood:	n/a	n/a
30	POU2F2	chr6:58287233-58287971	GM12891	blood:	n/a	n/a
31	EP300	chr6:58287621-58287975	SK-N-SH_RA	brain:	n/a	n/a
32	POLR2A	chr6:58287329-58288104	PFSK-1	brain:	n/a	n/a
33	SIN3AK20	chr6:58287182-58287985	SK-N-SH	brain:	n/a	n/a
34	CTCF	chr6:58287780-58287930	NHLF	lung:	n/a	chr6:58287791-58287807 chr6:58287792-58287805 chr6:58287790-58287808 chr6:58287792-58287805
35	CTCF	chr6:58287537-58287920	K562	blood:	n/a	chr6:58287791-58287807 chr6:58287792-58287805 chr6:58287790-58287808 chr6:58287792-58287805
36	TAF1	chr6:58287136-58288023	H1-hESC	embryonic stem cell:	n/a	n/a
37	CTCF	chr6:58287646-58287926	MCF-7	breast:	n/a	chr6:58287791-58287807 chr6:58287792-58287805 chr6:58287790-58287808 chr6:58287792-58287805
38	TCF12	chr6:58287471-58287975	HepG2	liver:	n/a	chr6:58287547-58287557
39	POLR2A	chr6:58287443-58287849	GM18505	blood:	n/a	n/a
40	POLR2A	chr6:58287188-58287877	Hela-S3	cervix:	n/a	n/a
41	CTCF	chr6:58287740-58287890	GM12866	blood:	n/a	chr6:58287791-58287807 chr6:58287792-58287805 chr6:58287790-58287808 chr6:58287792-58287805
42	ELF1	chr6:58287706-58287983	MCF-7	breast:	n/a	n/a
43	ETS1	chr6:58287562-58287905	GM12878	blood:	n/a	n/a
44	RFX5	chr6:58287699-58287827	Hela-S3	cervix:	n/a	n/a
45	NR3C1	chr6:58287512-58287866	A549	lung:	n/a	n/a
46	POLR2A	chr6:58287481-58287873	K562	blood:	n/a	n/a
47	CTCF	chr6:58287760-58287910	GM06990	blood:	n/a	chr6:58287791-58287807 chr6:58287792-58287805 chr6:58287790-58287808 chr6:58287792-58287805
48	CTCF	chr6:58287760-58287910	GM12865	blood:	n/a	chr6:58287791-58287807 chr6:58287792-58287805 chr6:58287790-58287808 chr6:58287792-58287805
49	SIN3AK20	chr6:58287425-58287841	PANC-1	pancreas:	n/a	n/a
50	CTCF	chr6:58287760-58287910	HPAF	blood vessel:	n/a	chr6:58287791-58287807 chr6:58287792-58287805 chr6:58287790-58287808 chr6:58287792-58287805

Variant related genes	Relation type
ENSG00000225096	TF binding region
LINC00680	TF binding region

Extended variants
information (count: 83 )
Associated
traits (count: 16 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1022472	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1022473	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1022474	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10789525	0.91[AFR][1000 genomes]
rs12213747	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1322444	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13777	0.80[EUR][1000 genomes]
rs15680	0.81[ASN][1000 genomes]
rs2012049	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2049928	0.93[AFR][1000 genomes]
rs2078508	0.87[ASN][1000 genomes]
rs2146167	0.80[AMR][1000 genomes]
rs2398050	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2758435	0.93[AFR][1000 genomes]
rs28397909	0.81[ASN][1000 genomes]
rs3864247	0.82[ASN][1000 genomes]
rs3895119	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3996599	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4469327	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4563744	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs477994	0.88[AFR][1000 genomes]
rs4928324	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4928423	0.90[AFR][1000 genomes]
rs4928424	0.97[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4928425	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4928426	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4928427	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4928428	0.83[AFR][1000 genomes]
rs4928430	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4928432	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6911080	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6931014	0.92[AFR][1000 genomes]
rs6934590	0.89[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs7751823	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7765285	0.94[AFR][1000 genomes]
rs926279	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9326195	0.84[AFR][1000 genomes]
rs9326196	0.93[AFR][1000 genomes]
rs9377702	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9391386	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9500095	0.88[AMR][1000 genomes]
rs9500243	0.96[AFR][1000 genomes]
rs9500250	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9500251	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs990886	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv436517	chr6:57696174-58296165	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv3332363	chr6:57709182-58454441	Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3426791	chr6:57741382-58349943	Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3440047	chr6:57766598-58396144	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3372144	chr6:57908014-58519523	Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv435830	chr6:57912721-58515824	Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	esv3503622	chr6:57916040-58522258	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	esv3503623	chr6:57916040-58522258	Strong transcription Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	esv3445656	chr6:57975137-58576488	Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv821647	chr6:58067314-58678227	Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv869817	chr6:58071721-58614002	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv885965	chr6:58075480-58308955	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
13	nsv523720	chr6:58075480-58770624	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
14	nsv1024377	chr6:58082084-58774716	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
15	nsv428148	chr6:58137660-58406917	Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
16	nsv1020262	chr6:58140288-58774716	ZNF genes & repeats Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
17	esv2760987	chr6:58140300-58774716	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
18	nsv1029158	chr6:58142069-58759016	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
19	nsv1017058	chr6:58165571-58774716	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
20	nsv1026793	chr6:58181781-58422630	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
21	nsv538259	chr6:58182242-58656519	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
22	nsv1019643	chr6:58213416-58350871	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
23	nsv1029598	chr6:58213416-58358630	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
24	nsv1030059	chr6:58222882-58377586	Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
25	nsv603237	chr6:58231219-58780055	Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
26	nsv885966	chr6:58238236-58333290	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
27	nsv1024304	chr6:58249544-58377586	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
28	nsv969409	chr6:58266198-58398028	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
29	nsv1033219	chr6:58272436-58350871	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
30	nsv1032544	chr6:58272436-58357395	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
31	nsv1021741	chr6:58272436-58358630	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
32	nsv1019797	chr6:58272436-58377586	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
33	nsv1022863	chr6:58272436-58386729	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
34	nsv462956	chr6:58272623-58357694	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
35	nsv603238	chr6:58272623-58357694	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
36	nsv527797	chr6:58278898-58368631	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
37	nsv462957	chr6:58285920-58770624	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
38	nsv603239	chr6:58285920-58770624	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:16)

SNP	Gene	Cis/trans	Tissue	Source
rs9404620	GUSBP4	cis	Nerve Tibial	GTEx
rs9404620	LINC00680	cis	Artery Tibial	GTEx
rs9404620	LINC00680	cis	Adipose Subcutaneous	GTEx
rs9404620	LINC00680	cis	Whole Blood	GTEx
rs9404620	LINC00680	cis	Esophagus Muscularis	GTEx
rs9404620	LINC00680	cis	Esophagus Mucosa	GTEx
rs9404620	LINC00680	cis	Artery Aorta	GTEx
rs9404620	LINC00680	cis	Nerve Tibial	GTEx
rs9404620	LINC00680	cis	Thyroid	GTEx
rs9404620	XXbac-BPGBPG55C20.2	cis	Esophagus Muscularis	GTEx
rs9404620	GUSBP4	cis	Adipose Subcutaneous	GTEx
rs9404620	LINC00680	cis	Stomach	GTEx
rs9404620	LINC00680	cis	lung	GTEx
rs9404620	LINC00680	cis	Muscle Skeletal	GTEx
rs9404620	LINC00680	cis	Skin Sun Exposed Lower leg	GTEx
rs9404620	GUSBL2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:58286400-58288000	Active TSS	Primary hematopoietic stem cells short term culture	blood
2	chr6:58286400-58288200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:58286400-58288200	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr6:58286400-58288200	Active TSS	HepG2	liver
5	chr6:58286600-58288000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:58286600-58288000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:58286600-58288000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:58286600-58288000	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr6:58286600-58288000	Active TSS	Muscle Satellite Cultured Cells	--
10	chr6:58286600-58288000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:58286600-58288000	Active TSS	Brain Germinal Matrix	brain
12	chr6:58286600-58288000	Active TSS	Fetal Brain Female	brain
13	chr6:58286600-58288000	Active TSS	Fetal Lung	lung
14	chr6:58286600-58288000	Active TSS	HMEC	breast
15	chr6:58286600-58288000	Active TSS	NHDF-Ad	bronchial
16	chr6:58286600-58288200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:58286600-58288200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:58286600-58288200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:58286600-58288200	Active TSS	Breast Myoepithelial Primary Cells	Breast
20	chr6:58286600-58288200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:58286600-58288200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:58286600-58288200	Active TSS	Stomach Smooth Muscle	stomach
23	chr6:58286600-58288200	Active TSS	Osteobl	bone
24	chr6:58286800-58288200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:58286800-58288200	Active TSS	Cortex derived primary cultured neurospheres	brain
26	chr6:58286800-58288200	Active TSS	Adipose Nuclei	Adipose
27	chr6:58287000-58288000	Active TSS	HUES48 Cell Line	embryonic stem cell
28	chr6:58287000-58288000	Active TSS	HUES64 Cell Line	embryonic stem cell
29	chr6:58287000-58288000	Active TSS	iPS-15b Cell Line	embryonic stem cell
30	chr6:58287000-58288000	Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr6:58287000-58288000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:58287000-58288000	Active TSS	Brain Angular Gyrus	brain
33	chr6:58287000-58288000	Active TSS	Brain Anterior Caudate	brain
34	chr6:58287000-58288000	Active TSS	Colonic Mucosa	Colon
35	chr6:58287000-58288000	Active TSS	Fetal Intestine Small	intestine
36	chr6:58287000-58288000	Active TSS	Fetal Kidney	kidney
37	chr6:58287000-58288000	Active TSS	Rectal Mucosa Donor 29	rectum
38	chr6:58287000-58288000	Active TSS	Rectal Mucosa Donor 31	rectum
39	chr6:58287000-58288000	Active TSS	Rectal Smooth Muscle	rectum
40	chr6:58287000-58288000	Active TSS	A549	lung
41	chr6:58287000-58288000	Active TSS	Hela-S3	cervix
42	chr6:58287000-58288000	Active TSS	HUVEC	blood vessel
43	chr6:58287000-58288000	Active TSS	K562	blood
44	chr6:58287000-58288000	Active TSS	NH-A	brain
45	chr6:58287000-58288000	Active TSS	NHEK	skin
46	chr6:58287000-58288200	Active TSS	HUES6 Cell Line	embryonic stem cell
47	chr6:58287000-58288200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:58287000-58288200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:58287000-58288200	Active TSS	Brain Inferior Temporal Lobe	brain
50	chr6:58287000-58288200	Active TSS	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links