Variant report

Variant	rs9407774
Chromosome Location	chr9:16410956-16410957
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12005952	0.85[YRI][hapmap]
rs1927640	0.88[CEU][hapmap]
rs1927641	0.88[CEU][hapmap]
rs2182901	0.87[ASN][1000 genomes]
rs4466492	0.85[CEU][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4961491	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4961718	0.91[JPT][hapmap]
rs6475053	0.95[YRI][hapmap]
rs9406642	0.82[AFR][1000 genomes]
rs9406644	0.82[AFR][1000 genomes]
rs9406645	0.83[AFR][1000 genomes]
rs9406647	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16400000-16411000	Weak transcription	NHLF	lung
2	chr9:16400600-16413800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:16405800-16416400	Weak transcription	HUVEC	blood vessel
4	chr9:16407000-16412800	Weak transcription	Ovary	ovary
5	chr9:16407200-16415800	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:16407200-16417000	Weak transcription	HSMM	muscle
7	chr9:16407400-16415800	Weak transcription	Fetal Kidney	kidney
8	chr9:16409800-16412000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr9:16410000-16411400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:16410000-16412000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:16410000-16412000	Flanking Active TSS	A549	lung
12	chr9:16410200-16411800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:16410200-16414600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr9:16410600-16411800	Enhancers	NHEK	skin
15	chr9:16410600-16413600	Enhancers	Fetal Lung	lung
16	chr9:16410800-16411200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:16410800-16411400	Enhancers	Osteobl	bone
18	chr9:16410800-16412000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:16410800-16415400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links