Variant report

Variant	rs9409332
Chromosome Location	chr9:104210879-104210880
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104160996..104162683-chr9:104210087..104212007,2	K562	blood:

Variant related genes	Relation type
ENSG00000136870	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17187478	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv893626	chr9:104172936-104324545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv614962	chr9:104204614-104240708	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104197000-104211400	Weak transcription	Right Atrium	heart
2	chr9:104204800-104211400	Weak transcription	Left Ventricle	heart
3	chr9:104205600-104211400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:104205800-104211000	Weak transcription	Fetal Heart	heart
5	chr9:104206400-104211400	Weak transcription	Brain Germinal Matrix	brain
6	chr9:104207000-104211400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:104207000-104211400	Weak transcription	Pancreas	Pancrea
8	chr9:104208000-104211400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr9:104208000-104211400	Weak transcription	Colon Smooth Muscle	Colon
10	chr9:104208200-104211000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:104208200-104211000	Weak transcription	Brain Hippocampus Middle	brain
12	chr9:104208200-104211000	Weak transcription	A549	lung
13	chr9:104208200-104211400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr9:104208400-104211000	Weak transcription	Brain Substantia Nigra	brain
15	chr9:104208400-104211200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr9:104208400-104211400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr9:104208600-104211400	Weak transcription	Brain Angular Gyrus	brain
18	chr9:104210200-104211000	Enhancers	Fetal Intestine Small	intestine
19	chr9:104210800-104211000	Enhancers	H1 Cell Line	embryonic stem cell
20	chr9:104210800-104211000	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
21	chr9:104210800-104211000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr9:104210800-104211000	Enhancers	Fetal Muscle Leg	muscle
23	chr9:104210800-104211200	Bivalent Enhancer	Primary B cells from cord blood	blood
24	chr9:104210800-104211200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr9:104210800-104211200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr9:104210800-104211200	Enhancers	Psoas Muscle	Psoas
27	chr9:104210800-104211400	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
28	chr9:104210800-104211400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
29	chr9:104210800-104211400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
30	chr9:104210800-104211400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr9:104210800-104211400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr9:104210800-104211400	Enhancers	Fetal Intestine Large	intestine
33	chr9:104210800-104211400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
34	chr9:104210800-104211400	Enhancers	Lung	lung
35	chr9:104210800-104211600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
36	chr9:104210800-104211600	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
37	chr9:104210800-104211600	Active TSS	Rectal Mucosa Donor 31	rectum
38	chr9:104210800-104211800	Active TSS	Liver	Liver
39	chr9:104210800-104211800	Active TSS	K562	blood
40	chr9:104210800-104212000	Active TSS	Hela-S3	cervix

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