Variant report

Variant	rs9409435
Chromosome Location	chr9:94348632-94348633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94344767..94346674-chr9:94347137..94349158,2	MCF-7	breast:
2	chr9:94186279..94188747-chr9:94348590..94350672,2	K562	blood:

Variant related genes	Relation type
ENSG00000233081	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1027268	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1027269	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10761121	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12551755	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12553224	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1388968	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1492683	0.82[EUR][1000 genomes]
rs1492684	0.84[EUR][1000 genomes]
rs1532231	0.87[EUR][1000 genomes]
rs1976220	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1976221	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2172356	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35665194	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4451437	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4743845	0.87[EUR][1000 genomes]
rs4744060	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4744063	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4744065	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4744066	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4744067	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4744069	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4744071	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4744074	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4744080	0.83[EUR][1000 genomes]
rs6479364	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7019783	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7026410	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7029450	0.87[EUR][1000 genomes]
rs7036860	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7039512	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7041541	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7871554	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9299393	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9409431	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9409432	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9409433	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9409434	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9409445	0.85[EUR][1000 genomes]
rs9409446	0.85[EUR][1000 genomes]
rs9409611	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9409612	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9409613	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9409615	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9695578	0.87[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94347800-94351200	Weak transcription	Spleen	Spleen
2	chr9:94348600-94349400	Enhancers	GM12878-XiMat	blood

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