Variant report

Variant	rs1492684
Chromosome Location	chr9:94405904-94405905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1027268	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1027269	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10761121	0.86[EUR][1000 genomes]
rs12551755	0.84[EUR][1000 genomes]
rs12553224	0.84[EUR][1000 genomes]
rs1388968	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1492683	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1532231	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1976220	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1976221	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2172356	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35665194	0.86[EUR][1000 genomes]
rs4451437	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4743845	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4744060	0.85[EUR][1000 genomes]
rs4744063	0.87[EUR][1000 genomes]
rs4744065	0.87[EUR][1000 genomes]
rs4744066	0.86[EUR][1000 genomes]
rs4744067	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4744069	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4744071	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4744074	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4744080	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6479364	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7019783	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7026410	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7029450	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7036860	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7039512	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7041541	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7871554	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9299393	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9409431	0.87[EUR][1000 genomes]
rs9409432	0.83[EUR][1000 genomes]
rs9409433	0.84[EUR][1000 genomes]
rs9409434	0.84[EUR][1000 genomes]
rs9409435	0.84[EUR][1000 genomes]
rs9409445	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9409446	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9409611	0.87[EUR][1000 genomes]
rs9409612	0.84[EUR][1000 genomes]
rs9409613	0.84[EUR][1000 genomes]
rs9409615	0.84[EUR][1000 genomes]
rs9409629	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9695578	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv818713	chr9:94396059-94406084	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94403800-94406000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr9:94405000-94406000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:94405200-94406600	Enhancers	Fetal Stomach	stomach
4	chr9:94405200-94406600	Enhancers	GM12878-XiMat	blood
5	chr9:94405400-94406000	Enhancers	Primary B cells from peripheral blood	blood
6	chr9:94405400-94406000	Enhancers	Fetal Muscle Trunk	muscle
7	chr9:94405400-94406400	Enhancers	Stomach Smooth Muscle	stomach
8	chr9:94405600-94406000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:94405600-94406000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:94405600-94406000	Enhancers	Pancreas	Pancrea
11	chr9:94405800-94406600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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