Variant report

Variant	rs9409629
Chromosome Location	chr9:94384797-94384798
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1027268	0.84[EUR][1000 genomes]
rs1027269	0.85[EUR][1000 genomes]
rs10761121	0.81[EUR][1000 genomes]
rs1388968	0.82[EUR][1000 genomes]
rs1492683	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1492684	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1532231	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1976220	0.85[EUR][1000 genomes]
rs1976221	0.81[EUR][1000 genomes]
rs2172356	0.85[EUR][1000 genomes]
rs35665194	0.81[EUR][1000 genomes]
rs4743845	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4744063	0.82[EUR][1000 genomes]
rs4744065	0.82[EUR][1000 genomes]
rs4744066	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4744067	0.82[EUR][1000 genomes]
rs4744069	0.85[EUR][1000 genomes]
rs4744071	0.85[EUR][1000 genomes]
rs4744074	0.85[EUR][1000 genomes]
rs4744080	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6479364	0.83[EUR][1000 genomes]
rs7019783	0.83[EUR][1000 genomes]
rs7026410	0.85[EUR][1000 genomes]
rs7029450	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7036860	0.81[EUR][1000 genomes]
rs7039512	0.83[EUR][1000 genomes]
rs7041541	0.84[EUR][1000 genomes]
rs7871554	0.82[EUR][1000 genomes]
rs9299393	0.83[EUR][1000 genomes]
rs9409431	0.82[EUR][1000 genomes]
rs9409445	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9409446	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9409611	0.82[EUR][1000 genomes]
rs9695578	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1051194	chr9:94371037-94394234	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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