Variant report

Variant	rs9410194
Chromosome Location	chr9:140348401-140348402
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HEY1	chr9:140348306-140348734	K562	blood:	n/a	n/a
2	SP1	chr9:140348319-140348733	GM12878	blood:	n/a	chr9:140348380-140348390
3	POLR2A	chr9:140348301-140349302	GM12878	blood:	n/a	n/a
4	POLR2A	chr9:140348270-140349039	GM15510	blood:	n/a	n/a
5	ZBTB7A	chr9:140348182-140348497	K562	blood:	n/a	n/a
6	POLR2A	chr9:140348146-140348726	Hela-S3	cervix:	n/a	n/a
7	POLR2A	chr9:140346961-140350666	HepG2	liver:	n/a	n/a
8	POU2F2	chr9:140348242-140348767	GM12878	blood:	n/a	chr9:140348301-140348313
9	PAX5	chr9:140348357-140348658	GM12878	blood:	n/a	n/a
10	SP4	chr9:140348133-140348533	H1-hESC	embryonic stem cell:	n/a	chr9:140348303-140348319 chr9:140348377-140348393 chr9:140348151-140348167 chr9:140348305-140348316
11	HEY1	chr9:140347892-140349838	HepG2	liver:	n/a	chr9:140348301-140348316 chr9:140349478-140349487 chr9:140348161-140348176
12	POLR2A	chr9:140348009-140348554	HepG2	liver:	n/a	n/a
13	POLR2A	chr9:140348142-140348622	PFSK-1	brain:	n/a	n/a
14	SIN3A	chr9:140348065-140348447	H1-hESC	embryonic stem cell:	n/a	chr9:140348162-140348175
15	POLR2A	chr9:140348213-140348567	HepG2	liver:	n/a	n/a
16	HEY1	chr9:140348279-140349683	HepG2	liver:	n/a	chr9:140348301-140348316 chr9:140349478-140349487
17	SP4	chr9:140347917-140348475	H1-hESC	embryonic stem cell:	n/a	chr9:140348303-140348319 chr9:140348377-140348393 chr9:140348151-140348167 chr9:140348305-140348316
18	HMGN3	chr9:140348359-140348935	K562	blood:	n/a	n/a
19	POLR2A	chr9:140348070-140348536	HUVEC	blood vessel:	n/a	n/a
20	POLR2A	chr9:140348229-140349128	K562	blood:	n/a	n/a
21	POLR2A	chr9:140348132-140349291	GM12878	blood:	n/a	n/a
22	POLR2A	chr9:140348035-140348599	HUVEC	blood vessel:	n/a	n/a
23	SP1	chr9:140348127-140348514	H1-hESC	embryonic stem cell:	n/a	chr9:140348306-140348316 chr9:140348380-140348390 chr9:140348307-140348316 chr9:140348305-140348317 chr9:140348305-140348317 chr9:140348305-140348316 chr9:140348307-140348316 chr9:140348306-140348315
24	PML	chr9:140348106-140348499	GM12878	blood:	n/a	n/a
25	FOSL2	chr9:140348163-140348813	HepG2	liver:	n/a	n/a
26	JUND	chr9:140348384-140348736	HepG2	liver:	n/a	n/a
27	POLR2A	chr9:140348162-140348454	GM12878	blood:	n/a	n/a
28	POLR2A	chr9:140348266-140348549	HCT-116	colon:	n/a	n/a
29	ZBTB7A	chr9:140347879-140348507	ECC-1	luminal epithelium:	n/a	n/a
30	POLR2A	chr9:140348230-140348711	A549	lung:	n/a	n/a
31	CHD2	chr9:140348302-140348448	H1-hESC	embryonic stem cell:	n/a	n/a
32	MAZ	chr9:140348238-140349066	K562	blood:	n/a	n/a
33	POLR2A	chr9:140348296-140348484	IMR90	lung:	n/a	n/a
34	MTA3	chr9:140348029-140348429	GM12878	blood:	n/a	n/a
35	POLR2A	chr9:140348126-140350317	GM12878	blood:	n/a	n/a
36	POLR2A	chr9:140348071-140349758	GM12892	blood:	n/a	n/a
37	SP1	chr9:140348254-140348875	GM12878	blood:	n/a	chr9:140348816-140348825 chr9:140348306-140348316 chr9:140348380-140348390 chr9:140348747-140348756 chr9:140348307-140348316 chr9:140348305-140348317 chr9:140348814-140348825 chr9:140348746-140348755 chr9:140348305-140348317 chr9:140348305-140348316 chr9:140348307-140348316 chr9:140348306-140348315 chr9:140348815-140348825
38	POLR2A	chr9:140348196-140349850	HepG2	liver:	n/a	n/a
39	POLR2A	chr9:140347868-140348549	K562	blood:	n/a	n/a
40	POLR2A	chr9:140348214-140348551	HCT-116	colon:	n/a	n/a
41	IRF1	chr9:140348281-140348902	K562	blood:	n/a	chr9:140348305-140348319
42	POLR2A	chr9:140348198-140349972	HepG2	liver:	n/a	n/a
43	ZBTB7A	chr9:140347859-140348442	ECC-1	luminal epithelium:	n/a	n/a
44	JUND	chr9:140348330-140348746	HepG2	liver:	n/a	n/a
45	MAX	chr9:140348314-140348542	K562	blood:	n/a	n/a
46	CHD2	chr9:140347818-140348417	K562	blood:	n/a	n/a
47	SP1	chr9:140348274-140348792	HepG2	liver:	n/a	chr9:140348306-140348316 chr9:140348380-140348390 chr9:140348747-140348756 chr9:140348307-140348316 chr9:140348305-140348317 chr9:140348746-140348755 chr9:140348305-140348317 chr9:140348305-140348316 chr9:140348307-140348316 chr9:140348306-140348315
48	POLR2A	chr9:140348141-140348535	K562	blood:	n/a	n/a
49	POLR2A	chr9:140348248-140348476	GM12892	blood:	n/a	n/a
50	POLR2A	chr9:140348197-140348496	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:140094431..140096407-chr9:140348032..140350852,2	K562	blood:
2	chr9:140336000..140341073-chr9:140346212..140348839,4	MCF-7	breast:
3	chr9:140190600..140200304-chr9:140345387..140357836,26	K562	blood:
4	chr9:140325901..140335846-chr9:140346696..140354798,14	K562	blood:
5	chr9:140134025..140136288-chr9:140347230..140351135,3	MCF-7	breast:
6	chr9:140187521..140190515-chr9:140347544..140351878,5	K562	blood:
7	chr9:140193679..140198220-chr9:140345750..140348456,5	K562	blood:
8	chr9:140330654..140334741-chr9:140346905..140349971,3	MCF-7	breast:
9	chr9:140169668..140172993-chr9:140345187..140348460,4	K562	blood:
10	chr9:140194311..140198751-chr9:140346825..140350718,5	MCF-7	breast:
11	chr9:140148238..140151177-chr9:140347489..140350432,3	K562	blood:
12	chr9:140169668..140172993-chr9:140344261..140348460,4	K562	blood:

Variant related genes	Relation type
NSMF	TF binding region
ENSG00000260996	Chromatin interaction
ENSG00000176058	Chromatin interaction
ENSG00000198113	Chromatin interaction
ENSG00000188986	Chromatin interaction
ENSG00000188229	Chromatin interaction
ENSG00000188833	Chromatin interaction
ENSG00000198435	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1054864	0.85[LWK][hapmap]
rs13301653	1.00[JPT][hapmap]
rs28589413	1.00[ASN][1000 genomes]
rs28606499	1.00[ASN][1000 genomes]
rs4962237	1.00[JPT][hapmap]
rs9410115	1.00[ASN][1000 genomes]
rs9414734	1.00[ASN][1000 genomes]
rs9722391	1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:56 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
2	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
3	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
4	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
5	nsv524322	chr9:139690144-140376668	Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	371 gene(s)	inside rSNPs	diseases
6	nsv894474	chr9:139694521-140432318	Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	374 gene(s)	inside rSNPs	diseases
7	nsv540352	chr9:139695108-140351178	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
8	nsv894484	chr9:139709976-140382705	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	360 gene(s)	inside rSNPs	diseases
9	nsv894485	chr9:139709976-140408904	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
10	nsv894486	chr9:139725120-140382705	Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	359 gene(s)	inside rSNPs	diseases
11	nsv894487	chr9:139725120-140449582	Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
12	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
13	nsv894501	chr9:139823670-140400275	Genic enhancers Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
14	nsv894502	chr9:139823670-140487108	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
15	esv1823555	chr9:139834714-140362439	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
16	nsv894522	chr9:139860631-140411547	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	331 gene(s)	inside rSNPs	diseases
17	nsv894523	chr9:139860631-140462099	Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
18	nsv894556	chr9:139904037-140408904	Active TSS Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
19	nsv894562	chr9:139906359-140382705	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	307 gene(s)	inside rSNPs	diseases
20	nsv894563	chr9:139906359-140408904	Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
21	nsv894564	chr9:139906359-140432318	Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
22	nsv894583	chr9:139950351-140382705	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	297 gene(s)	inside rSNPs	diseases
23	nsv894584	chr9:139950351-140400275	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	298 gene(s)	inside rSNPs	diseases
24	nsv894588	chr9:139963091-140372570	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	295 gene(s)	inside rSNPs	diseases
25	nsv894606	chr9:140018138-140368860	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
26	nsv894607	chr9:140018138-140382705	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
27	nsv894608	chr9:140018138-140392494	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
28	nsv894609	chr9:140018138-140400275	Enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	275 gene(s)	inside rSNPs	diseases
29	nsv894610	chr9:140018138-140408904	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	277 gene(s)	inside rSNPs	diseases
30	nsv894626	chr9:140068342-140368860	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	268 gene(s)	inside rSNPs	diseases
31	nsv894627	chr9:140068342-140382705	Genic enhancers Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	268 gene(s)	inside rSNPs	diseases
32	nsv894628	chr9:140068342-140400275	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	269 gene(s)	inside rSNPs	diseases
33	nsv894638	chr9:140094605-140368860	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
34	nsv531664	chr9:140110329-140725056	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	275 gene(s)	inside rSNPs	diseases
35	nsv531654	chr9:140110329-141033187	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	281 gene(s)	inside rSNPs	diseases
36	esv1824250	chr9:140118448-140390615	Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	230 gene(s)	inside rSNPs	diseases
37	nsv894645	chr9:140165584-140408904	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
38	nsv1047563	chr9:140219047-140560852	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
39	nsv540357	chr9:140219047-140560852	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
40	nsv531602	chr9:140240417-140535223	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	96 gene(s)	inside rSNPs	diseases
41	nsv932633	chr9:140240417-141053535	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
42	nsv894654	chr9:140243547-140382705	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
43	nsv894655	chr9:140243547-140392494	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
44	nsv1035524	chr9:140251014-140751633	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
45	nsv1053628	chr9:140260666-141005637	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
46	nsv534215	chr9:140286134-141008915	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	105 gene(s)	inside rSNPs	n/a
47	nsv894659	chr9:140300156-140357972	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	47 gene(s)	inside rSNPs	n/a
48	nsv894660	chr9:140301447-140411547	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	n/a
49	nsv1035388	chr9:140306746-140654768	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	96 gene(s)	inside rSNPs	n/a
50	nsv894661	chr9:140316819-140366217	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	46 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140336600-140348600	Weak transcription	Left Ventricle	heart
2	chr9:140336800-140352400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr9:140340800-140348600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr9:140340800-140349000	Weak transcription	HSMM	muscle
5	chr9:140341000-140349200	Weak transcription	Psoas Muscle	Psoas
6	chr9:140341200-140348800	Weak transcription	NH-A	brain
7	chr9:140344000-140350800	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr9:140344200-140349000	Weak transcription	Fetal Lung	lung
9	chr9:140344400-140348800	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr9:140344400-140349800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr9:140344600-140348800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr9:140344800-140348800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr9:140344800-140349800	Enhancers	Spleen	Spleen
14	chr9:140346200-140349800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr9:140346400-140348800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr9:140346400-140351800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr9:140346800-140348800	Strong transcription	Muscle Satellite Cultured Cells	--
18	chr9:140346800-140352400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:140347000-140348800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr9:140347000-140350800	Strong transcription	NHLF	lung
21	chr9:140347200-140348800	Bivalent Enhancer	Placenta	Placenta
22	chr9:140347400-140348800	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr9:140347400-140348800	Enhancers	Stomach Mucosa	stomach
24	chr9:140347600-140348800	Enhancers	Liver	Liver
25	chr9:140347600-140348800	Enhancers	Lung	lung
26	chr9:140347600-140348800	Enhancers	Placenta Amnion	Placenta Amnion
27	chr9:140347600-140349600	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr9:140347600-140352400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr9:140347800-140348600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr9:140347800-140348600	Weak transcription	Duodenum Mucosa	Duodenum
31	chr9:140347800-140348800	Active TSS	HUES64 Cell Line	embryonic stem cell
32	chr9:140347800-140348800	Active TSS	iPS-20b Cell Line	embryonic stem cell
33	chr9:140347800-140348800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr9:140347800-140348800	Enhancers	Primary T cells fromperipheralblood	blood
35	chr9:140347800-140348800	Weak transcription	Brain Anterior Caudate	brain
36	chr9:140347800-140348800	Weak transcription	Ovary	ovary
37	chr9:140347800-140348800	Enhancers	Pancreas	Pancrea
38	chr9:140347800-140348800	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr9:140347800-140349000	Active TSS	iPS-15b Cell Line	embryonic stem cell
40	chr9:140347800-140349000	Active TSS	Rectal Smooth Muscle	rectum
41	chr9:140347800-140349000	Weak transcription	HSMMtube	muscle
42	chr9:140347800-140349200	Active TSS	iPS-18 Cell Line	embryonic stem cell
43	chr9:140347800-140349200	Weak transcription	Brain Substantia Nigra	brain
44	chr9:140347800-140349400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
45	chr9:140347800-140350400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr9:140347800-140351200	Weak transcription	Brain Angular Gyrus	brain
47	chr9:140347800-140352400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr9:140347800-140354600	Enhancers	Fetal Brain Male	brain
49	chr9:140348000-140348800	Active TSS	H1 Cell Line	embryonic stem cell
50	chr9:140348000-140348800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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