Variant report

Variant	rs941860
Chromosome Location	chr6:70835427-70835428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13210726	0.81[YRI][hapmap]
rs2093375	0.81[JPT][hapmap]
rs2093376	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2145904	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs2181011	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs2208609	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs3793055	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3806031	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs3806032	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs3806033	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs3806034	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs3806037	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs3828772	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs6455355	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs6908849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6938971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6940436	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs7751501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs941862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1026836	chr6:70727747-70849014	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv830683	chr6:70743422-70941190	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70832600-70836800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:70834000-70835600	Enhancers	Fetal Kidney	kidney
3	chr6:70834000-70835800	Enhancers	Fetal Intestine Small	intestine
4	chr6:70834200-70835800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:70834400-70835600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:70834400-70835800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:70834400-70835800	Enhancers	NHDF-Ad	bronchial
8	chr6:70834400-70840400	Weak transcription	GM12878-XiMat	blood
9	chr6:70834600-70835600	Enhancers	HSMM	muscle
10	chr6:70834600-70835800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr6:70834600-70835800	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr6:70834600-70836000	Enhancers	Fetal Intestine Large	intestine
13	chr6:70834600-70839400	Strong transcription	Primary B cells from cord blood	blood
14	chr6:70834600-70845400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:70834600-70845800	Strong transcription	Primary B cells from peripheral blood	blood
16	chr6:70834800-70835800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:70835000-70836400	Enhancers	HSMMtube	muscle
18	chr6:70835000-70839000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:70835400-70835600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:70835400-70842000	Weak transcription	Pancreas	Pancrea

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