Variant report

Variant	rs9420216
Chromosome Location	chr10:118628922-118628923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10787736	0.82[YRI][hapmap]
rs9420213	0.84[AFR][1000 genomes]
rs9421254	1.00[ASW][hapmap];0.82[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs9421257	0.88[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv971856	chr10:118626730-118630578	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118628000-118629000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:118628000-118630200	Weak transcription	Liver	Liver
3	chr10:118628400-118631400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr10:118628800-118629200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr10:118628800-118629400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:118628800-118629400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr10:118628800-118629600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr10:118628800-118629600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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