Variant report

Variant	rs9421254
Chromosome Location	chr10:118653607-118653608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118647284..118650159-chr10:118653455..118655400,2	MCF-7	breast:
2	chr10:118647239..118651488-chr10:118651970..118654207,4	MCF-7	breast:

rs_ID	r²[population]
rs10787736	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs10787752	1.00[AMR][1000 genomes]
rs1657505	1.00[AMR][1000 genomes]
rs1898350	1.00[AMR][1000 genomes]
rs9420216	1.00[ASW][hapmap];0.82[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs9421257	0.88[YRI][hapmap];0.85[AFR][1000 genomes]

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118637200-118658800	Weak transcription	Pancreas	Pancrea
2	chr10:118637600-118670400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:118639000-118666600	Weak transcription	Fetal Intestine Small	intestine
4	chr10:118641800-118658800	Weak transcription	K562	blood
5	chr10:118641800-118665200	Weak transcription	HepG2	liver
6	chr10:118641800-118665400	Weak transcription	Fetal Brain Female	brain
7	chr10:118642600-118670400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:118645400-118673200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr10:118647400-118680000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:118648800-118659000	Weak transcription	Fetal Intestine Large	intestine
11	chr10:118648800-118698600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:118649200-118658800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:118649200-118658800	Weak transcription	Liver	Liver
14	chr10:118649200-118670400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr10:118649200-118681200	Weak transcription	Stomach Mucosa	stomach
16	chr10:118649200-118698400	Weak transcription	Esophagus	oesophagus
17	chr10:118649400-118658600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:118649400-118665000	Weak transcription	NHEK	skin
19	chr10:118649400-118665200	Weak transcription	Hela-S3	cervix
20	chr10:118649600-118655800	Weak transcription	A549	lung
21	chr10:118650200-118653800	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr10:118650200-118654000	Enhancers	Brain Cingulate Gyrus	brain
23	chr10:118650200-118656600	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr10:118650400-118658800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr10:118650600-118659600	Weak transcription	HMEC	breast
26	chr10:118651200-118654000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr10:118651200-118656800	Weak transcription	NHDF-Ad	bronchial
28	chr10:118651200-118659000	Weak transcription	Aorta	Aorta
29	chr10:118651600-118658800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr10:118651600-118665200	Weak transcription	Adipose Nuclei	Adipose
31	chr10:118651800-118658600	Weak transcription	Brain Germinal Matrix	brain
32	chr10:118651800-118658800	Weak transcription	Brain Angular Gyrus	brain
33	chr10:118651800-118658800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr10:118651800-118658800	Weak transcription	Brain Substantia Nigra	brain
35	chr10:118651800-118661200	Weak transcription	Brain Anterior Caudate	brain
36	chr10:118651800-118665800	Weak transcription	NH-A	brain
37	chr10:118651800-118670600	Weak transcription	HSMMtube	muscle
38	chr10:118651800-118689800	Weak transcription	HSMM	muscle
39	chr10:118651800-118706600	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr10:118652000-118671600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr10:118652000-118736200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr10:118652200-118654000	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr10:118652200-118654400	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr10:118652200-118654400	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr10:118652400-118654400	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr10:118652400-118655000	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr10:118652600-118654000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr10:118652600-118654000	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr10:118652600-118654600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr10:118653000-118654000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links