Variant report

Variant	rs1657505
Chromosome Location	chr10:118854085-118854086
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10787736	1.00[AMR][1000 genomes]
rs10787752	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1657503	1.00[AFR][1000 genomes]
rs1898350	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9421254	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118851200-118854200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:118851200-118855200	Enhancers	Brain Germinal Matrix	brain
3	chr10:118851400-118854400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr10:118852400-118854200	Enhancers	Brain Substantia Nigra	brain
5	chr10:118852800-118854600	Weak transcription	Brain Angular Gyrus	brain
6	chr10:118853000-118854800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:118853200-118854400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:118853400-118855400	Enhancers	Brain Anterior Caudate	brain
9	chr10:118853600-118855000	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr10:118853800-118854600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr10:118853800-118856400	Enhancers	Brain Cingulate Gyrus	brain
12	chr10:118853800-118857200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr10:118854000-118854400	Weak transcription	Brain Hippocampus Middle	brain
14	chr10:118854000-118854800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr10:118854000-118855000	Enhancers	Fetal Brain Male	brain
16	chr10:118854000-118857200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr10:118854000-118857400	Enhancers	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links