Variant report

Variant	rs10787752
Chromosome Location	chr10:118826586-118826587
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10787736	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1657503	0.92[AFR][1000 genomes]
rs1657505	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1898350	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4752024	0.81[AFR][1000 genomes]
rs9420216	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];0.88[YRI][hapmap]
rs9421254	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[MKK][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10787752	ATPAF2	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118826000-118826600	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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