Variant report

Variant	rs9422363
Chromosome Location	chr10:43912275-43912276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr10:43910777-43913953	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:43911150..43912712-chr10:43915997..43917552,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230555	TF binding region
ENSG00000230555	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10793432	0.80[AFR][1000 genomes]
rs2066043	0.82[AFR][1000 genomes]
rs2248335	0.81[AFR][1000 genomes]
rs2248469	0.82[AFR][1000 genomes]
rs2999282	0.82[AFR][1000 genomes]
rs3000700	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv831842	chr10:43846541-43987501	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv895088	chr10:43871999-44003101	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	nsv825354	chr10:43883418-43949936	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
6	nsv825355	chr10:43890579-43923802	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
7	nsv825356	chr10:43893080-43946515	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43905600-43913600	Weak transcription	Esophagus	oesophagus
2	chr10:43905800-43913400	Weak transcription	Fetal Intestine Small	intestine
3	chr10:43905800-43913800	Weak transcription	Stomach Mucosa	stomach
4	chr10:43905800-43915600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:43905800-43915600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:43906000-43915800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:43906200-43915200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:43906400-43915600	Weak transcription	Hela-S3	cervix
9	chr10:43907600-43915600	Weak transcription	NHEK	skin
10	chr10:43907800-43913600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr10:43908800-43912600	Enhancers	K562	blood
12	chr10:43909000-43913400	Weak transcription	HepG2	liver
13	chr10:43909000-43913600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:43909200-43912400	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr10:43909200-43912400	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr10:43911600-43912600	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr10:43911600-43914600	Enhancers	Primary B cells from cord blood	blood
18	chr10:43911600-43914600	Enhancers	Primary hematopoietic stem cells	blood
19	chr10:43911600-43915200	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr10:43911800-43915600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:43912000-43912400	Enhancers	Dnd41	blood
22	chr10:43912000-43912600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:43912000-43912600	Active TSS	Placenta	Placenta
24	chr10:43912000-43915600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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