Variant report

Variant	rs9423374
Chromosome Location	chr10:4815602-4815603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:3827220..3830181-chr10:4813992..4816815,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs313431	1.00[AFR][1000 genomes]
rs313432	1.00[AFR][1000 genomes]
rs369836	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4806200-4822800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:4813600-4816000	Enhancers	NHDF-Ad	bronchial
3	chr10:4814200-4818000	Weak transcription	A549	lung
4	chr10:4814600-4817600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:4814600-4817800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:4814600-4817800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:4814600-4820800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:4814800-4817600	Weak transcription	NHEK	skin
9	chr10:4814800-4817800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:4814800-4817800	Weak transcription	HSMMtube	muscle
11	chr10:4815000-4815800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr10:4815000-4817600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:4815000-4817600	Weak transcription	HMEC	breast
14	chr10:4815200-4815800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:4815200-4817600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:4815200-4817800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:4815200-4817800	Weak transcription	HSMM	muscle
18	chr10:4815400-4817600	Weak transcription	Osteobl	bone
19	chr10:4815600-4815800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:4815600-4816000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:4815600-4817200	Genic enhancers	HUVEC	blood vessel

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