Variant report

Variant	rs9425304
Chromosome Location	chr1:172371151-172371152
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:172010620..172011265-chr1:172370736..172371242,2	MCF-7	breast:
2	chr1:172369690..172372664-chr1:172375281..172378143,4	K562	blood:
3	chr1:172059095..172060013-chr1:172369694..172372109,8	MCF-7	breast:
4	chr1:172059051..172060007-chr1:172370843..172371887,3	MCF-7	breast:
5	chr1:171971958..171972542-chr1:172370745..172371601,3	MCF-7	breast:
6	chr1:172059201..172061771-chr1:172370034..172372067,2	MCF-7	breast:
7	chr1:172370608..172371793-chr1:172398217..172399124,4	MCF-7	breast:
8	chr1:172370747..172372510-chr1:172384588..172387579,2	K562	blood:

No data

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10798026	0.87[CEU][hapmap]
rs4916266	0.88[CEU][hapmap]
rs7519429	0.81[EUR][1000 genomes]
rs7528296	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9425596	0.91[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9425304	PIGC	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172352400-172386400	Weak transcription	Psoas Muscle	Psoas
2	chr1:172366800-172371200	Enhancers	Rectal Smooth Muscle	rectum
3	chr1:172367000-172372800	Enhancers	Primary T cells from cord blood	blood
4	chr1:172367200-172372000	Enhancers	Fetal Lung	lung
5	chr1:172368400-172390800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:172368600-172374800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:172368800-172371400	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr1:172368800-172376800	Weak transcription	Fetal Brain Male	brain
9	chr1:172369000-172371600	Enhancers	Ovary	ovary
10	chr1:172369200-172372400	Enhancers	Aorta	Aorta
11	chr1:172369400-172371800	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr1:172369400-172372000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr1:172369400-172372200	Weak transcription	Brain Substantia Nigra	brain
14	chr1:172369400-172372400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr1:172369400-172373200	Weak transcription	Fetal Brain Female	brain
16	chr1:172369600-172371600	Weak transcription	Brain Anterior Caudate	brain
17	chr1:172369600-172371800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr1:172369600-172372000	Weak transcription	Brain Angular Gyrus	brain
19	chr1:172369600-172372200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr1:172369600-172372200	Weak transcription	Fetal Intestine Small	intestine
21	chr1:172369600-172372400	Weak transcription	Brain Hippocampus Middle	brain
22	chr1:172369600-172372400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr1:172369600-172377000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr1:172369600-172377600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr1:172369800-172372000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr1:172369800-172372200	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr1:172369800-172372200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr1:172369800-172375000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr1:172369800-172375000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr1:172370000-172372400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr1:172370200-172372000	Weak transcription	Fetal Muscle Leg	muscle
32	chr1:172370200-172372400	Weak transcription	NHDF-Ad	bronchial
33	chr1:172370200-172373000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr1:172370200-172385600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr1:172370600-172371800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr1:172370600-172372000	Weak transcription	Colon Smooth Muscle	Colon
37	chr1:172370600-172378200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr1:172370600-172378200	Weak transcription	Fetal Kidney	kidney
39	chr1:172370800-172371200	Weak transcription	Fetal Stomach	stomach
40	chr1:172370800-172371800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr1:172370800-172371800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr1:172370800-172372200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr1:172371000-172371200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr1:172371000-172371400	Enhancers	K562	blood

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