Variant report

Variant	rs9425596
Chromosome Location	chr1:172369347-172369348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:172058604..172060338-chr1:172368296..172369500,16	MCF-7	breast:
2	chr1:172368766..172370642-chr1:172413206..172415397,2	K562	blood:
3	chr1:172010410..172011489-chr1:172368146..172369453,8	MCF-7	breast:
4	chr1:172061150..172062084-chr1:172368563..172369443,2	MCF-7	breast:
5	chr1:172368021..172370277-chr1:172372809..172374587,2	K562	blood:
6	chr1:172290820..172291829-chr1:172368303..172369352,3	MCF-7	breast:
7	chr1:172368576..172370246-chr1:172375053..172377189,2	MCF-7	breast:
8	chr1:172057507..172059128-chr1:172367828..172369980,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000135845	Chromatin interaction
ENSG00000180999	Chromatin interaction

rs_ID	r²[population]
rs10752946	1.00[YRI][hapmap]
rs12134821	1.00[YRI][hapmap]
rs7528296	0.91[CHB][hapmap]
rs9425304	0.91[CHB][hapmap]
rs9425598	1.00[YRI][hapmap]

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172352400-172386400	Weak transcription	Psoas Muscle	Psoas
2	chr1:172365800-172370000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:172366200-172369600	Enhancers	Brain Angular Gyrus	brain
4	chr1:172366200-172369800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:172366200-172370200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:172366200-172370200	Enhancers	NH-A	brain
7	chr1:172366400-172369400	Enhancers	HMEC	breast
8	chr1:172366400-172369600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr1:172366600-172369600	Enhancers	HSMM	muscle
10	chr1:172366800-172371200	Enhancers	Rectal Smooth Muscle	rectum
11	chr1:172367000-172369600	Enhancers	Primary B cells from peripheral blood	blood
12	chr1:172367000-172370600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr1:172367000-172372800	Enhancers	Primary T cells from cord blood	blood
14	chr1:172367200-172369800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr1:172367200-172370800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr1:172367200-172370800	Enhancers	Fetal Stomach	stomach
17	chr1:172367200-172372000	Enhancers	Fetal Lung	lung
18	chr1:172367400-172369600	Enhancers	Fetal Intestine Small	intestine
19	chr1:172367600-172369400	Enhancers	NHLF	lung
20	chr1:172367600-172370600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr1:172367600-172370800	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr1:172367800-172369400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr1:172367800-172369600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr1:172367800-172369800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr1:172367800-172370200	Enhancers	HSMMtube	muscle
26	chr1:172368000-172369600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr1:172368000-172369800	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr1:172368000-172370200	Enhancers	Placenta Amnion	Placenta Amnion
29	chr1:172368200-172369400	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr1:172368200-172369400	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr1:172368200-172369600	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr1:172368200-172369800	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr1:172368200-172370200	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr1:172368200-172370800	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr1:172368400-172369400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr1:172368400-172369400	Enhancers	Duodenum Mucosa	Duodenum
37	chr1:172368400-172369600	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr1:172368400-172369800	Enhancers	Primary T cells fromperipheralblood	blood
39	chr1:172368400-172370200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
40	chr1:172368400-172370200	Enhancers	Fetal Muscle Leg	muscle
41	chr1:172368400-172390800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr1:172368600-172369400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr1:172368600-172369400	Enhancers	Fetal Brain Female	brain
44	chr1:172368600-172369600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr1:172368600-172369600	Enhancers	Fetal Intestine Large	intestine
46	chr1:172368600-172369600	Enhancers	Fetal Thymus	thymus
47	chr1:172368600-172369600	Enhancers	Left Ventricle	heart
48	chr1:172368600-172369600	Enhancers	Right Atrium	heart
49	chr1:172368600-172369600	Enhancers	Right Ventricle	heart
50	chr1:172368600-172369600	Enhancers	Sigmoid Colon	Sigmoid Colon

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