Variant report

Variant	rs9425437
Chromosome Location	chr1:173889319-173889320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173882932..173886692-chr1:173886862..173890895,4	K562	blood:
2	chr1:173832421..173839801-chr1:173885332..173891780,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234741	Chromatin interaction
ENSG00000208317	Chromatin interaction
ENSG00000185278	Chromatin interaction
ENSG00000117601	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10158274	1.00[AMR][1000 genomes]
rs10159349	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12239406	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13313018	1.00[AMR][1000 genomes]
rs13353004	0.83[AFR][1000 genomes]
rs13376339	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2227605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2227621	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4650988	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4652416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6425252	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7349122	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7349166	1.00[AFR][1000 genomes]
rs7525411	0.96[AFR][1000 genomes]
rs7536930	0.83[AFR][1000 genomes]
rs9286893	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9425412	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9425417	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9425429	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9425432	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9425732	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9425733	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9425737	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9425739	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9425743	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9425744	1.00[AMR][1000 genomes]
rs9425767	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9425769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9425770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9425771	1.00[AFR][1000 genomes]
rs9425777	0.91[AFR][1000 genomes]
rs9425778	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012384	chr1:173614816-173974426	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	294 gene(s)	inside rSNPs	diseases
2	nsv831926	chr1:173702403-173894667	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	291 gene(s)	inside rSNPs	diseases
3	esv2757761	chr1:173810642-173955943	Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	264 gene(s)	inside rSNPs	diseases
4	esv2758978	chr1:173810642-173955943	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	264 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173856600-173907200	Weak transcription	Brain Germinal Matrix	brain
2	chr1:173857400-173902000	Weak transcription	HSMMtube	muscle
3	chr1:173858200-173902800	Weak transcription	Left Ventricle	heart
4	chr1:173862000-173891600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr1:173870000-173898000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:173871200-173908400	Weak transcription	Spleen	Spleen
7	chr1:173872400-173896200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:173874400-173899800	Weak transcription	Primary T cells from cord blood	blood
9	chr1:173879200-173899400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr1:173882800-173912400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:173888400-173900200	Weak transcription	Right Atrium	heart
12	chr1:173888600-173892400	Weak transcription	Liver	Liver

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