Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10493747	0.95[ASN][1000 genomes]
rs10874438	0.93[ASN][1000 genomes]
rs11163962	0.93[ASN][1000 genomes]
rs12049602	0.93[ASN][1000 genomes]
rs12118984	0.95[ASN][1000 genomes]
rs12406723	0.93[ASN][1000 genomes]
rs1588037	0.93[ASN][1000 genomes]
rs17131704	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558268	0.83[ASN][1000 genomes]
rs6576704	0.93[ASN][1000 genomes]
rs667923	0.93[ASN][1000 genomes]
rs679152	0.93[ASN][1000 genomes]
rs7512262	0.93[ASN][1000 genomes]
rs7514601	0.95[ASN][1000 genomes]
rs7515964	0.92[ASN][1000 genomes]
rs7516125	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7541465	0.93[ASN][1000 genomes]
rs7547088	0.94[ASN][1000 genomes]
rs7548231	0.91[ASN][1000 genomes]
rs9433225	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84909000-84912000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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