Variant report

Variant	rs7547088
Chromosome Location	chr1:84904922-84904923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84902465..84904153-chr1:84904370..84905923,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10493747	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10874438	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11163962	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12049602	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12118984	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12406723	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1246330	0.88[EUR][1000 genomes]
rs1246331	0.86[EUR][1000 genomes]
rs1588037	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17131704	0.94[ASN][1000 genomes]
rs500565	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs558268	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs646681	0.87[JPT][hapmap]
rs6576704	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6661172	0.93[CEU][hapmap];0.89[YRI][hapmap];0.94[EUR][1000 genomes]
rs667923	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs679152	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7511984	0.93[CEU][hapmap];0.88[YRI][hapmap];0.94[EUR][1000 genomes]
rs7512262	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7514601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7515964	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7516125	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7541465	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7548231	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9432829	0.94[ASN][1000 genomes]
rs9433225	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84899600-84907800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:84899600-84908200	Weak transcription	Stomach Mucosa	stomach
3	chr1:84899600-84908400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr1:84899800-84907800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:84901200-84908800	Weak transcription	NHLF	lung
6	chr1:84901400-84907400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr1:84901400-84907600	Weak transcription	Dnd41	blood
8	chr1:84901600-84908200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr1:84902000-84908400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:84902800-84908000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr1:84903400-84908200	Weak transcription	GM12878-XiMat	blood
12	chr1:84903800-84907800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr1:84903800-84908200	Weak transcription	Primary B cells from cord blood	blood
14	chr1:84903800-84908200	Weak transcription	Primary B cells from peripheral blood	blood
15	chr1:84903800-84908400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr1:84903800-84908400	Weak transcription	Fetal Thymus	thymus
17	chr1:84903800-84908600	Weak transcription	Thymus	Thymus
18	chr1:84904000-84907800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr1:84904000-84907800	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr1:84904000-84907800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr1:84904000-84907800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr1:84904000-84908000	Weak transcription	Primary T cells from cord blood	blood
23	chr1:84904000-84908200	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr1:84904000-84908200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr1:84904000-84908200	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr1:84904000-84908600	Weak transcription	Primary hematopoietic stem cells	blood
27	chr1:84904200-84907600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr1:84904600-84905000	Enhancers	Fetal Brain Male	brain
29	chr1:84904600-84907800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links