Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10493747	0.94[EUR][1000 genomes]
rs10874438	0.99[EUR][1000 genomes]
rs11163962	0.98[EUR][1000 genomes]
rs12049602	0.97[EUR][1000 genomes]
rs12118984	0.94[EUR][1000 genomes]
rs12406723	0.98[EUR][1000 genomes]
rs1246330	0.94[EUR][1000 genomes]
rs1246331	0.92[EUR][1000 genomes]
rs1588037	0.99[EUR][1000 genomes]
rs500565	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs558268	0.92[EUR][1000 genomes]
rs646681	0.81[EUR][1000 genomes]
rs6576704	0.95[EUR][1000 genomes]
rs667923	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs679152	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs7511984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7512262	0.98[EUR][1000 genomes]
rs7514601	0.93[CEU][hapmap];0.94[YRI][hapmap];0.94[EUR][1000 genomes]
rs7515964	0.94[EUR][1000 genomes]
rs7516125	0.85[EUR][1000 genomes]
rs7541465	0.97[EUR][1000 genomes]
rs7547088	0.94[EUR][1000 genomes]
rs7548231	0.96[EUR][1000 genomes]
rs9433225	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84872000-84876400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:84872400-84876800	Weak transcription	Gastric	stomach
3	chr1:84873200-84876400	Weak transcription	Osteobl	bone
4	chr1:84874000-84876000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr1:84874000-84876000	Weak transcription	HUVEC	blood vessel
6	chr1:84874000-84878200	Weak transcription	Psoas Muscle	Psoas
7	chr1:84874200-84875600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr1:84874200-84876200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:84874200-84876400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:84874200-84878000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr1:84874200-84878200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr1:84874400-84878200	Weak transcription	Aorta	Aorta
13	chr1:84874800-84876600	Enhancers	Liver	Liver
14	chr1:84874800-84877000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:84874800-84877000	Enhancers	Fetal Intestine Large	intestine
16	chr1:84874800-84877000	Enhancers	Fetal Intestine Small	intestine
17	chr1:84874800-84877000	Enhancers	Stomach Mucosa	stomach
18	chr1:84875000-84876800	Enhancers	Brain Hippocampus Middle	brain
19	chr1:84875200-84875600	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr1:84875200-84875800	Enhancers	Duodenum Mucosa	Duodenum
21	chr1:84875400-84877000	Enhancers	Rectal Mucosa Donor 31	rectum

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