Variant report
| Variant | rs9443596 |
|---|---|
| Chromosome Location | chr6:79293596-79293597 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs16890160 | 1.00[EUR][1000 genomes] |
| rs7746614 | 1.00[EUR][1000 genomes] |
| rs9443576 | 1.00[EUR][1000 genomes] |
| rs9443585 | 1.00[EUR][1000 genomes] |
| rs9443595 | 1.00[EUR][1000 genomes] |
| rs9443597 | 1.00[EUR][1000 genomes] |
| rs9443598 | 1.00[EUR][1000 genomes] |
| rs9443605 | 1.00[EUR][1000 genomes] |
| rs9448429 | 1.00[EUR][1000 genomes] |
| rs9448438 | 1.00[EUR][1000 genomes] |
| rs9448441 | 1.00[EUR][1000 genomes] |
| rs9448471 | 1.00[EUR][1000 genomes] |
| rs9448472 | 1.00[EUR][1000 genomes] |
| rs9448473 | 1.00[EUR][1000 genomes] |
| rs9448475 | 1.00[EUR][1000 genomes] |
| rs9448480 | 1.00[EUR][1000 genomes] |
| rs9448481 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9448485 | 1.00[EUR][1000 genomes] |
| rs9448486 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9448487 | 1.00[EUR][1000 genomes] |
| rs9448488 | 1.00[EUR][1000 genomes] |
| rs9448502 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9448504 | 1.00[EUR][1000 genomes] |
| rs9448507 | 1.00[EUR][1000 genomes] |
| rs9448509 | 1.00[EUR][1000 genomes] |
| rs9448510 | 1.00[EUR][1000 genomes] |
| rs9448511 | 1.00[EUR][1000 genomes] |
| rs9448512 | 1.00[EUR][1000 genomes] |
| rs9448513 | 1.00[EUR][1000 genomes] |
| rs9448517 | 1.00[EUR][1000 genomes] |
| rs9448533 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv886235 | chr6:78861808-79369972 | Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv604011 | chr6:79042990-79455282 | Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv886300 | chr6:79129963-79341891 | Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv522646 | chr6:79185106-79333988 | Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv1028767 | chr6:79200713-79341224 | Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:79288400-79304400 | Weak transcription | HUVEC | blood vessel |
