Variant report

Variant	rs9443605
Chromosome Location	chr6:79341997-79341998
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs16890160	1.00[EUR][1000 genomes]
rs7746614	1.00[EUR][1000 genomes]
rs9443576	1.00[EUR][1000 genomes]
rs9443585	1.00[EUR][1000 genomes]
rs9443595	1.00[EUR][1000 genomes]
rs9443596	1.00[EUR][1000 genomes]
rs9443597	1.00[EUR][1000 genomes]
rs9443598	1.00[EUR][1000 genomes]
rs9448429	1.00[EUR][1000 genomes]
rs9448438	1.00[EUR][1000 genomes]
rs9448441	1.00[EUR][1000 genomes]
rs9448471	1.00[EUR][1000 genomes]
rs9448472	1.00[EUR][1000 genomes]
rs9448473	1.00[EUR][1000 genomes]
rs9448475	1.00[EUR][1000 genomes]
rs9448480	1.00[EUR][1000 genomes]
rs9448481	1.00[EUR][1000 genomes]
rs9448485	1.00[EUR][1000 genomes]
rs9448486	1.00[EUR][1000 genomes]
rs9448487	1.00[EUR][1000 genomes]
rs9448488	1.00[EUR][1000 genomes]
rs9448502	1.00[EUR][1000 genomes]
rs9448504	1.00[EUR][1000 genomes]
rs9448507	1.00[EUR][1000 genomes]
rs9448509	1.00[EUR][1000 genomes]
rs9448510	1.00[EUR][1000 genomes]
rs9448511	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9448512	1.00[EUR][1000 genomes]
rs9448513	1.00[EUR][1000 genomes]
rs9448517	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9448533	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886235	chr6:78861808-79369972	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv604011	chr6:79042990-79455282	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79339600-79345600	Weak transcription	Fetal Brain Female	brain
2	chr6:79341600-79342000	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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