Variant report

Variant	rs9443760
Chromosome Location	chr6:81165698-81165699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs56773466	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59688459	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61159972	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6901881	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6927815	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6939318	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9294176	0.86[AFR][1000 genomes]
rs9443763	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443764	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443769	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9448947	1.00[AMR][1000 genomes]
rs9448954	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9448958	1.00[AMR][1000 genomes]
rs9448965	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9448970	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9448971	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9448972	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9448976	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9448981	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9448982	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1018028	chr6:81138011-81201697	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1019932	chr6:81155458-81217868	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81154400-81165800	Weak transcription	Primary T cells from cord blood	blood
2	chr6:81156400-81166800	Weak transcription	Aorta	Aorta
3	chr6:81156400-81167000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:81156400-81167000	Weak transcription	Pancreas	Pancrea
5	chr6:81158000-81166400	Weak transcription	Liver	Liver
6	chr6:81162800-81166200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:81162800-81168400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:81162800-81168400	Enhancers	HMEC	breast
9	chr6:81163000-81165800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:81163000-81179800	Weak transcription	Right Ventricle	heart
11	chr6:81163200-81166800	Weak transcription	Brain Hippocampus Middle	brain
12	chr6:81163200-81168200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:81163200-81169800	Weak transcription	Fetal Heart	heart
14	chr6:81163400-81165800	Enhancers	NHLF	lung
15	chr6:81163400-81166800	Weak transcription	Brain Angular Gyrus	brain
16	chr6:81163400-81167200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr6:81163400-81168400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:81164200-81166200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:81164400-81166800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr6:81164400-81167000	Weak transcription	Ovary	ovary
21	chr6:81164600-81166800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:81164600-81166800	Weak transcription	Fetal Muscle Leg	muscle
23	chr6:81164600-81166800	Weak transcription	HSMMtube	muscle
24	chr6:81164600-81167000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr6:81164800-81165800	Enhancers	NHEK	skin
26	chr6:81165000-81166400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:81165000-81166800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:81165000-81166800	Weak transcription	Stomach Mucosa	stomach
29	chr6:81165000-81166800	Weak transcription	HSMM	muscle
30	chr6:81165200-81166600	Weak transcription	Fetal Stomach	stomach
31	chr6:81165200-81166600	Weak transcription	Osteobl	bone
32	chr6:81165200-81166800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:81165200-81166800	Weak transcription	NH-A	brain
34	chr6:81165200-81167000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr6:81165200-81167200	Enhancers	HUVEC	blood vessel
36	chr6:81165400-81166400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr6:81165400-81166400	Weak transcription	NHDF-Ad	bronchial
38	chr6:81165400-81166600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:81165400-81166800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr6:81165600-81166800	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr6:81165600-81166800	Weak transcription	Hela-S3	cervix

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