Variant report

Variant	rs9448970
Chromosome Location	chr6:81183847-81183848
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs56773466	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56920849	0.85[AFR][1000 genomes]
rs58341988	0.85[AFR][1000 genomes]
rs59184742	0.85[AFR][1000 genomes]
rs59688459	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60733634	0.85[AFR][1000 genomes]
rs61159972	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6901881	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6927815	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6932027	0.85[AFR][1000 genomes]
rs6939318	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7746091	0.85[AFR][1000 genomes]
rs9294176	1.00[AFR][1000 genomes]
rs9443752	0.82[AFR][1000 genomes]
rs9443753	0.85[AFR][1000 genomes]
rs9443755	0.85[AFR][1000 genomes]
rs9443759	0.85[AFR][1000 genomes]
rs9443760	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443769	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9448947	1.00[AMR][1000 genomes]
rs9448952	0.85[AFR][1000 genomes]
rs9448953	0.85[AFR][1000 genomes]
rs9448954	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9448957	0.85[AFR][1000 genomes]
rs9448958	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9448960	0.85[AFR][1000 genomes]
rs9448964	0.85[AFR][1000 genomes]
rs9448965	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9448971	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9448972	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9448976	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9448981	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9448982	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1018028	chr6:81138011-81201697	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1019932	chr6:81155458-81217868	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv886311	chr6:81166178-81239971	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv886313	chr6:81177227-81239971	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81167600-81184800	Weak transcription	Pancreas	Pancrea
2	chr6:81168200-81187000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:81170800-81187200	Weak transcription	HSMM	muscle
4	chr6:81178600-81187000	Weak transcription	Fetal Intestine Small	intestine
5	chr6:81180000-81185000	Weak transcription	NHDF-Ad	bronchial
6	chr6:81182800-81189800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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