Variant report

Variant	rs7746091
Chromosome Location	chr6:81144002-81144003
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs56773466	0.87[AFR][1000 genomes]
rs56920849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58341988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59184742	1.00[AFR][1000 genomes]
rs59688459	0.82[AFR][1000 genomes]
rs60733634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61159972	0.87[AFR][1000 genomes]
rs6901881	0.82[AFR][1000 genomes]
rs6927815	0.82[AFR][1000 genomes]
rs6932027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6939318	0.86[AFR][1000 genomes]
rs9294176	0.85[AFR][1000 genomes]
rs9443752	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443757	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443763	0.85[AFR][1000 genomes]
rs9443764	0.85[AFR][1000 genomes]
rs9448952	1.00[AFR][1000 genomes]
rs9448953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9448954	0.84[AFR][1000 genomes]
rs9448957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9448960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9448964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9448965	0.87[AFR][1000 genomes]
rs9448970	0.85[AFR][1000 genomes]
rs9448971	0.82[AFR][1000 genomes]
rs9448972	0.82[AFR][1000 genomes]
rs9448981	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1018028	chr6:81138011-81201697	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81135800-81147600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:81142400-81163800	Weak transcription	Ovary	ovary
3	chr6:81143000-81145000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:81143200-81144400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:81143200-81145400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:81143200-81145400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:81143400-81147400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:81143400-81147400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:81143400-81148400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:81143400-81156000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:81143600-81145200	Enhancers	Osteobl	bone
12	chr6:81143600-81147000	Weak transcription	NHLF	lung
13	chr6:81143600-81147200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:81143600-81147600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr6:81143600-81152400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:81143600-81155600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:81143800-81144600	Weak transcription	HepG2	liver
18	chr6:81143800-81144800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:81143800-81148400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr6:81143800-81148400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:81144000-81147000	Weak transcription	Muscle Satellite Cultured Cells	--

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