Variant report

Variant	rs9448960
Chromosome Location	chr6:81143392-81143393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs56773466	0.87[AFR][1000 genomes]
rs56920849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58341988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59184742	1.00[AFR][1000 genomes]
rs59688459	0.82[AFR][1000 genomes]
rs60733634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61159972	0.87[AFR][1000 genomes]
rs6901881	0.82[AFR][1000 genomes]
rs6927815	0.82[AFR][1000 genomes]
rs6932027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6939318	0.86[AFR][1000 genomes]
rs7746091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9294176	0.85[AFR][1000 genomes]
rs9443752	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443757	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443763	0.85[AFR][1000 genomes]
rs9443764	0.85[AFR][1000 genomes]
rs9448952	1.00[AFR][1000 genomes]
rs9448953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9448954	0.84[AFR][1000 genomes]
rs9448957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9448964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9448965	0.87[AFR][1000 genomes]
rs9448970	0.85[AFR][1000 genomes]
rs9448971	0.82[AFR][1000 genomes]
rs9448972	0.82[AFR][1000 genomes]
rs9448981	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv969422	chr6:81135489-81143409	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv1018028	chr6:81138011-81201697	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81135800-81143400	Weak transcription	NHLF	lung
2	chr6:81135800-81147600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:81142400-81163800	Weak transcription	Ovary	ovary
4	chr6:81142800-81143400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:81142800-81143400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:81142800-81143600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:81142800-81143600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:81142800-81143600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:81142800-81143800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:81142800-81143800	Enhancers	Fetal Lung	lung
11	chr6:81143000-81143400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr6:81143000-81143400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:81143000-81143400	Enhancers	Fetal Stomach	stomach
14	chr6:81143000-81143400	Enhancers	Placenta Amnion	Placenta Amnion
15	chr6:81143000-81143600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:81143000-81145000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr6:81143200-81143400	Weak transcription	HepG2	liver
18	chr6:81143200-81143600	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr6:81143200-81143600	Flanking Active TSS	Osteobl	bone
20	chr6:81143200-81143800	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr6:81143200-81143800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:81143200-81144000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr6:81143200-81144400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:81143200-81145400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:81143200-81145400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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