Variant report

Variant	rs9446214
Chromosome Location	chr6:70949480-70949481
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1040655	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16868806	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17692231	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17692261	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17692395	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56733295	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6914511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6923695	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73747127	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73747128	0.95[EUR][1000 genomes]
rs73749919	1.00[EUR][1000 genomes]
rs73749921	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73749922	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73749923	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9446213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9455012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9455013	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv934035	chr6:70948905-70950105	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70931400-70961400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:70932600-70951800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:70933000-70951800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:70934400-70951600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:70939000-70951600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:70947000-70950400	Weak transcription	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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