Variant report

Variant	rs9455013
Chromosome Location	chr6:70951240-70951241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:70947725..70951615-chr6:71103397..71106109,3	K562	blood:

Variant related genes	Relation type
ENSG00000237643	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1040655	0.86[ASW][hapmap];1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1200564	0.82[CEU][hapmap]
rs1200566	0.85[CEU][hapmap]
rs1517043	0.85[CEU][hapmap];0.93[GIH][hapmap]
rs16868641	0.85[CEU][hapmap];0.86[GIH][hapmap]
rs16868806	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17690121	0.85[CEU][hapmap];0.86[GIH][hapmap]
rs17692231	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17692261	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17692395	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3793042	1.00[JPT][hapmap]
rs3806089	0.82[TSI][hapmap]
rs476026	0.85[CEU][hapmap]
rs476740	0.85[CEU][hapmap]
rs487928	0.85[CEU][hapmap]
rs540654	0.85[CEU][hapmap];0.86[GIH][hapmap]
rs56733295	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs577010	0.85[CEU][hapmap];0.86[GIH][hapmap]
rs607716	0.85[CEU][hapmap];0.86[GIH][hapmap]
rs630131	1.00[JPT][hapmap]
rs661521	0.85[CEU][hapmap]
rs6914511	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6923695	0.86[ASW][hapmap];1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs73747127	0.97[EUR][1000 genomes]
rs73747128	0.97[EUR][1000 genomes]
rs73749919	0.98[EUR][1000 genomes]
rs73749921	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73749922	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73749923	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446213	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9446214	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9455012	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70931400-70961400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:70932600-70951800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:70933000-70951800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:70934400-70951600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:70939000-70951600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:70950400-70952000	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr6:70950400-70952200	Enhancers	Fetal Stomach	stomach
8	chr6:70950800-70951400	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:70950800-70951400	Weak transcription	Colonic Mucosa	Colon
10	chr6:70950800-70952200	Enhancers	Duodenum Mucosa	Duodenum
11	chr6:70950800-70952200	Active TSS	Rectal Smooth Muscle	rectum
12	chr6:70951000-70951800	Active TSS	Rectal Mucosa Donor 31	rectum
13	chr6:70951000-70951800	Enhancers	Stomach Mucosa	stomach
14	chr6:70951200-70951800	Weak transcription	Small Intestine	intestine
15	chr6:70951200-70952000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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