Variant report

Variant	rs9446357
Chromosome Location	chr6:71941724-71941725
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10080816	0.83[EUR][1000 genomes]
rs12193343	0.87[EUR][1000 genomes]
rs4432948	1.00[CHD][hapmap]
rs4645382	1.00[ASN][1000 genomes]
rs7745843	0.89[EUR][1000 genomes]
rs9346449	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016393	chr6:71890237-71941786	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv526921	chr6:71890237-71950242	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv5341	chr6:71925073-71956936	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71937400-71946600	Weak transcription	Primary B cells from cord blood	blood
2	chr6:71938600-71942600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:71940200-71945800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:71941000-71946600	Weak transcription	Left Ventricle	heart
5	chr6:71941200-71941800	Enhancers	Muscle Satellite Cultured Cells	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links