Variant report

Variant	rs9448929
Chromosome Location	chr6:81043140-81043141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9448927	1.00[AMR][1000 genomes]
rs9448928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv1796319	chr6:81034505-81058025	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	esv16646	chr6:81040322-81055387	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81005200-81056200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:81027000-81044600	Weak transcription	Aorta	Aorta
3	chr6:81029400-81079600	Weak transcription	HSMM	muscle
4	chr6:81033800-81070200	Weak transcription	Left Ventricle	heart
5	chr6:81036800-81044600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:81037400-81044800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:81037600-81044400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:81038200-81044800	Weak transcription	Fetal Lung	lung
9	chr6:81038600-81044000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:81039200-81043200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:81039200-81045200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:81039400-81044200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:81039600-81044800	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:81039800-81043200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:81041000-81043800	Enhancers	Brain Germinal Matrix	brain
16	chr6:81041000-81044400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:81041200-81043800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr6:81041200-81044400	Enhancers	Fetal Brain Female	brain
19	chr6:81041600-81044200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr6:81041600-81044400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:81041600-81044800	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr6:81041600-81044800	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr6:81041600-81045600	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr6:81042000-81043800	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr6:81042000-81044400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr6:81042000-81044600	Weak transcription	Fetal Muscle Leg	muscle
27	chr6:81042000-81044800	Weak transcription	Brain Anterior Caudate	brain
28	chr6:81042200-81043200	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr6:81042200-81056400	Weak transcription	Fetal Heart	heart
30	chr6:81042600-81043400	Enhancers	H9 Cell Line	embryonic stem cell
31	chr6:81042800-81044600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:81043000-81043200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links