Variant report

Variant	rs9449091
Chromosome Location	chr6:81308727-81308728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10943716	0.82[EUR][1000 genomes]
rs10943717	0.81[EUR][1000 genomes]
rs10943718	0.81[EUR][1000 genomes]
rs12200933	0.81[EUR][1000 genomes]
rs1657308	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1698340	0.82[EUR][1000 genomes]
rs2085110	0.85[AMR][1000 genomes]
rs2168104	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2322840	0.82[EUR][1000 genomes]
rs2322841	0.82[EUR][1000 genomes]
rs2444795	0.87[AMR][1000 genomes]
rs2496682	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2503719	0.83[EUR][1000 genomes]
rs2653481	0.82[EUR][1000 genomes]
rs2917599	0.83[EUR][1000 genomes]
rs2917601	0.81[EUR][1000 genomes]
rs4455626	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4481396	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4612123	0.82[EUR][1000 genomes]
rs484019	0.82[EUR][1000 genomes]
rs504505	0.83[EUR][1000 genomes]
rs585401	0.82[EUR][1000 genomes]
rs591403	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs600262	0.84[EUR][1000 genomes]
rs607208	0.82[EUR][1000 genomes]
rs630692	0.84[EUR][1000 genomes]
rs643557	0.84[EUR][1000 genomes]
rs652200	0.83[EUR][1000 genomes]
rs668698	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs676224	0.84[EUR][1000 genomes]
rs7738465	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9443791	0.84[EUR][1000 genomes]
rs9443797	0.82[EUR][1000 genomes]
rs9449059	0.82[EUR][1000 genomes]
rs9449060	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9449061	0.82[EUR][1000 genomes]
rs9449063	0.82[EUR][1000 genomes]
rs9449067	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9449068	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1020533	chr6:81288890-81406533	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv538340	chr6:81288890-81406533	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv508417	chr6:81290516-81330590	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv604085	chr6:81297890-81439973	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81294800-81317000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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