Variant report

Variant	rs9449063
Chromosome Location	chr6:81251116-81251117
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:81249220..81251616-chr6:81254290..81256470,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10943716	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943717	0.96[CEU][hapmap];0.82[CHB][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10943718	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12200933	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13212000	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1657308	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1698340	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2168104	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2322840	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2322841	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2503719	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2653481	0.84[EUR][1000 genomes]
rs2917599	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2917601	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4455626	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4481396	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4612123	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484019	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs486831	0.81[CHB][hapmap]
rs504505	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs559528	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs565531	0.92[CEU][hapmap];0.90[CHB][hapmap];0.88[EUR][1000 genomes]
rs585401	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs591403	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs600262	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs607208	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs630692	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs632422	0.89[EUR][1000 genomes]
rs643557	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs652200	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs668698	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs676224	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs682310	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7738465	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9443791	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9443797	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9449059	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9449060	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9449061	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9449067	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9449068	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9449080	0.82[EUR][1000 genomes]
rs9449091	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv463908	chr6:81232993-81287675	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv604054	chr6:81232993-81287675	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81249600-81251800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:81249600-81252000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:81249600-81252000	Enhancers	Placenta Amnion	Placenta Amnion
4	chr6:81249600-81252200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:81249600-81252400	Enhancers	HMEC	breast
6	chr6:81249600-81253600	Enhancers	HSMM	muscle
7	chr6:81249800-81252200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:81249800-81252200	Enhancers	Hela-S3	cervix
9	chr6:81249800-81252400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:81250000-81252200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:81250200-81251800	Enhancers	NHLF	lung
12	chr6:81250200-81252000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:81250200-81252000	Enhancers	NH-A	brain
14	chr6:81250200-81252200	Enhancers	NHDF-Ad	bronchial
15	chr6:81250400-81251400	Enhancers	HUVEC	blood vessel
16	chr6:81250400-81251800	Enhancers	HSMMtube	muscle
17	chr6:81250400-81252000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:81250400-81252000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:81250400-81252200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:81250600-81252000	Enhancers	Osteobl	bone
21	chr6:81250800-81252000	Enhancers	NHEK	skin
22	chr6:81250800-81253400	Enhancers	Muscle Satellite Cultured Cells	--
23	chr6:81251000-81251200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:81251000-81258000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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