Variant report

Variant	rs682310
Chromosome Location	chr6:81244882-81244883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:81244830..81247376-chr6:81252160..81253797,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10943716	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10943717	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10943718	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12200933	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13212000	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1657308	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1698340	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2168104	0.85[EUR][1000 genomes]
rs2322840	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2322841	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2503719	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2917599	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2917601	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4455626	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4481396	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4612123	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs484019	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs504505	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs559528	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs565531	0.80[EUR][1000 genomes]
rs585401	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs591403	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs600262	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs607208	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs630692	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs632422	0.81[EUR][1000 genomes]
rs643557	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs652200	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs668698	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs676224	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7738465	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9443791	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9443797	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9449059	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9449060	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9449061	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9449063	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9449067	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9449068	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv463908	chr6:81232993-81287675	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv604054	chr6:81232993-81287675	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81233600-81249600	Weak transcription	HSMM	muscle
2	chr6:81234200-81245000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:81234200-81245200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:81234200-81249600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:81241200-81246600	Weak transcription	Placenta Amnion	Placenta Amnion

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