Variant report

Variant	rs9449411
Chromosome Location	chr6:82811297-82811298
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1002783	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13203503	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1556778	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2105123	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6454253	0.87[ASN][1000 genomes]
rs6934271	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7753505	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9449409	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9449420	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs945854	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021464	chr6:82738920-82876526	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830713	chr6:82761201-82953570	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv830715	chr6:82806657-82956327	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82810600-82811400	Active TSS	HepG2	liver
2	chr6:82810600-82811600	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr6:82810600-82811600	Active TSS	H9 Cell Line	embryonic stem cell
4	chr6:82810800-82811600	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr6:82810800-82811600	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr6:82810800-82811600	Active TSS	K562	blood
7	chr6:82811000-82811400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr6:82811000-82811400	Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr6:82811000-82811400	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr6:82811000-82811400	Active TSS	Placenta	Placenta
11	chr6:82811000-82811600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:82811200-82811400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
13	chr6:82811200-82811400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:82811200-82811600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:82811200-82811600	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr6:82811200-82811600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:82811200-82811800	Active TSS	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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