Variant report

Variant	rs9454689
Chromosome Location	chr6:62940564-62940565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10484617	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11970323	1.00[AMR][1000 genomes]
rs58114783	1.00[AMR][1000 genomes]
rs59087458	1.00[AMR][1000 genomes]
rs59795625	1.00[AMR][1000 genomes]
rs73488988	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489259	1.00[AMR][1000 genomes]
rs73490818	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490828	1.00[AMR][1000 genomes]
rs73491125	1.00[AMR][1000 genomes]
rs7749735	1.00[AMR][1000 genomes]
rs9445960	1.00[AMR][1000 genomes]
rs9446101	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446105	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9454105	1.00[AMR][1000 genomes]
rs9454466	1.00[AMR][1000 genomes]
rs9454714	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9454721	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017249	chr6:62906813-63317382	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020677	chr6:62911584-63309663	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1021518	chr6:62927880-62974776	ZNF genes & repeats Enhancers Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:62939600-62941000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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