Variant report

Variant	rs9454714
Chromosome Location	chr6:62949244-62949245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10484617	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11970323	1.00[AMR][1000 genomes]
rs58114783	1.00[AMR][1000 genomes]
rs59087458	1.00[AMR][1000 genomes]
rs59795625	1.00[AMR][1000 genomes]
rs73488988	1.00[AMR][1000 genomes]
rs73489259	1.00[AMR][1000 genomes]
rs73490818	1.00[AMR][1000 genomes]
rs73490828	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73491125	1.00[AMR][1000 genomes]
rs7749735	1.00[AMR][1000 genomes]
rs9283832	0.83[AFR][1000 genomes]
rs9445960	1.00[AMR][1000 genomes]
rs9446101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446105	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446185	0.83[AFR][1000 genomes]
rs9454105	1.00[AMR][1000 genomes]
rs9454428	0.83[AFR][1000 genomes]
rs9454466	1.00[AMR][1000 genomes]
rs9454689	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9454721	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017249	chr6:62906813-63317382	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020677	chr6:62911584-63309663	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1021518	chr6:62927880-62974776	ZNF genes & repeats Enhancers Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv532025	chr6:62944349-63571677	Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv916760	chr6:62944661-63290986	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:62944000-62988200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:62949200-62949800	ZNF genes & repeats	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links