Variant report

Variant	rs9456637
Chromosome Location	chr6:161573836-161573837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:161573770-161574361	A549	lung:	n/a	chr6:161574125-161574138 chr6:161574122-161574140
2	CTCF	chr6:161573820-161573970	WI-38	lung:	n/a	n/a
3	NR2F2	chr6:161573813-161574187	K562	blood:	n/a	n/a
4	RAD21	chr6:161573714-161574586	SK-N-SH	brain:	n/a	chr6:161574128-161574138 chr6:161574128-161574140 chr6:161574123-161574142 chr6:161573773-161573783 chr6:161574126-161574139
5	RAD21	chr6:161573738-161574556	HCT-116	colon:	n/a	chr6:161574128-161574138 chr6:161574128-161574140 chr6:161574123-161574142 chr6:161573773-161573783 chr6:161574126-161574139
6	CTCF	chr6:161573756-161574518	SK-N-SH	brain:	n/a	chr6:161574125-161574138 chr6:161574122-161574140
7	HMGN3	chr6:161573704-161574030	K562	blood:	n/a	n/a
8	CTCF	chr6:161573740-161573890	AoAF	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:161552790..161554841-chr6:161572944..161575587,2	K562	blood:
2	chr6:161566821..161570627-chr6:161571928..161576334,7	K562	blood:
3	chr6:161573780..161576255-chr6:161588186..161590338,2	K562	blood:
4	chr6:161375051..161376590-chr6:161572468..161574179,2	K562	blood:
5	chr6:161410626..161414170-chr6:161571894..161574169,3	K562	blood:
6	chr6:161564867..161570084-chr6:161571350..161575451,5	K562	blood:

Variant related genes	Relation type
AGPAT4	TF binding region
ENSG00000026652	Chromatin interaction
ENSG00000272841	Chromatin interaction
ENSG00000085511	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1474914	1.00[ASN][1000 genomes]
rs16892229	0.81[ASN][1000 genomes]
rs1967716	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2018762	0.81[ASN][1000 genomes]
rs2064718	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2314375	0.81[ASN][1000 genomes]
rs3798920	0.81[ASN][1000 genomes]
rs3798921	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3798923	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3798924	0.84[ASN][1000 genomes]
rs61552758	0.81[ASN][1000 genomes]
rs6924597	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6934457	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786014	0.81[ASN][1000 genomes]
rs7752907	0.81[AMR][1000 genomes]
rs7754843	1.00[ASN][1000 genomes]
rs7775897	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs910722	0.94[EUR][1000 genomes]
rs910723	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs940520	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1030852	chr6:161477750-161589394	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161541000-161584600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:161542000-161585600	Weak transcription	Fetal Kidney	kidney
3	chr6:161544600-161589600	Weak transcription	Fetal Brain Male	brain
4	chr6:161545000-161584800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:161548400-161590800	Weak transcription	Fetal Thymus	thymus
6	chr6:161549200-161577000	Strong transcription	Fetal Brain Female	brain
7	chr6:161549200-161577400	Strong transcription	Fetal Stomach	stomach
8	chr6:161549800-161589400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr6:161550000-161584600	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr6:161550200-161577400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:161553800-161586600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:161554000-161574000	Weak transcription	Pancreas	Pancrea
13	chr6:161554000-161591000	Weak transcription	Colonic Mucosa	Colon
14	chr6:161555000-161585000	Weak transcription	Right Atrium	heart
15	chr6:161555800-161586600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:161557600-161574400	Weak transcription	Gastric	stomach
17	chr6:161557600-161581400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:161557800-161584200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr6:161558200-161577800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:161558200-161582600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:161558200-161589400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr6:161558400-161581400	Weak transcription	Colon Smooth Muscle	Colon
23	chr6:161558600-161574400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr6:161559400-161587600	Weak transcription	Fetal Intestine Large	intestine
25	chr6:161560000-161583200	Weak transcription	HMEC	breast
26	chr6:161560200-161574800	Weak transcription	Right Ventricle	heart
27	chr6:161560200-161583800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr6:161560400-161581400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr6:161560400-161584600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr6:161560600-161584400	Weak transcription	NHLF	lung
31	chr6:161560800-161582400	Weak transcription	HSMMtube	muscle
32	chr6:161561200-161574200	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr6:161562600-161574200	Weak transcription	Esophagus	oesophagus
34	chr6:161563400-161588200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:161564000-161574000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr6:161564800-161577000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:161566000-161577600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr6:161566200-161577400	Strong transcription	Fetal Muscle Trunk	muscle
39	chr6:161566400-161574600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr6:161566600-161577400	Strong transcription	Brain Germinal Matrix	brain
41	chr6:161567000-161577600	Strong transcription	Fetal Muscle Leg	muscle
42	chr6:161567600-161578000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr6:161567600-161585400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr6:161568000-161581200	Weak transcription	Osteobl	bone
45	chr6:161568000-161581400	Weak transcription	NH-A	brain
46	chr6:161569200-161584600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:161569600-161581400	Weak transcription	NHDF-Ad	bronchial
48	chr6:161569800-161574000	Weak transcription	Ovary	ovary
49	chr6:161569800-161583000	Weak transcription	HSMM	muscle
50	chr6:161570200-161574200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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