Variant report

Variant	rs16892229
Chromosome Location	chr6:161577580-161577581
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161410816..161413684-chr6:161575440..161579081,3	K562	blood:

Variant related genes	Relation type
ENSG00000085511	Chromatin interaction
ENSG00000272841	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11751856	0.81[ASN][1000 genomes]
rs11753162	0.84[ASW][hapmap];1.00[CHD][hapmap];0.85[LWK][hapmap];0.81[ASN][1000 genomes]
rs11754766	1.00[CHD][hapmap];0.81[ASN][1000 genomes]
rs1474914	0.81[ASN][1000 genomes]
rs1967716	0.81[ASN][1000 genomes]
rs2018762	1.00[ASN][1000 genomes]
rs2314375	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3798920	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3798921	0.81[ASN][1000 genomes]
rs3798922	0.81[ASN][1000 genomes]
rs3798925	1.00[CHD][hapmap];0.81[ASN][1000 genomes]
rs61552758	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6934457	0.83[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs73786014	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754843	0.81[ASN][1000 genomes]
rs940520	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9456637	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1030852	chr6:161477750-161589394	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161541000-161584600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:161542000-161585600	Weak transcription	Fetal Kidney	kidney
3	chr6:161544600-161589600	Weak transcription	Fetal Brain Male	brain
4	chr6:161545000-161584800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:161548400-161590800	Weak transcription	Fetal Thymus	thymus
6	chr6:161549800-161589400	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr6:161550000-161584600	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr6:161553800-161586600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:161554000-161591000	Weak transcription	Colonic Mucosa	Colon
10	chr6:161555000-161585000	Weak transcription	Right Atrium	heart
11	chr6:161555800-161586600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:161557600-161581400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:161557800-161584200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr6:161558200-161577800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:161558200-161582600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:161558200-161589400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:161558400-161581400	Weak transcription	Colon Smooth Muscle	Colon
18	chr6:161559400-161587600	Weak transcription	Fetal Intestine Large	intestine
19	chr6:161560000-161583200	Weak transcription	HMEC	breast
20	chr6:161560200-161583800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:161560400-161581400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr6:161560400-161584600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:161560600-161584400	Weak transcription	NHLF	lung
24	chr6:161560800-161582400	Weak transcription	HSMMtube	muscle
25	chr6:161563400-161588200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:161566000-161577600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:161567000-161577600	Strong transcription	Fetal Muscle Leg	muscle
28	chr6:161567600-161578000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr6:161567600-161585400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr6:161568000-161581200	Weak transcription	Osteobl	bone
31	chr6:161568000-161581400	Weak transcription	NH-A	brain
32	chr6:161569200-161584600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:161569600-161581400	Weak transcription	NHDF-Ad	bronchial
34	chr6:161569800-161583000	Weak transcription	HSMM	muscle
35	chr6:161570200-161579000	Weak transcription	Primary hematopoietic stem cells	blood
36	chr6:161570200-161583200	Weak transcription	Left Ventricle	heart
37	chr6:161571000-161578600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:161571200-161580800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr6:161571200-161587600	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr6:161571600-161587400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr6:161572200-161582600	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr6:161572800-161586200	Weak transcription	K562	blood
43	chr6:161573000-161577600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr6:161573000-161579200	Strong transcription	Primary T cells from cord blood	blood
45	chr6:161573200-161578600	Weak transcription	Primary B cells from cord blood	blood
46	chr6:161573600-161577800	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr6:161573800-161581200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:161574600-161581600	Weak transcription	Spleen	Spleen
49	chr6:161574600-161583400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr6:161574600-161592400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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