Variant report

Variant	rs11751856
Chromosome Location	chr6:161590184-161590185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:161590079..161592412-chr6:161674654..161677002,2	K562	blood:
2	chr6:161495917..161498579-chr6:161589322..161591703,2	K562	blood:
3	chr6:161588147..161591123-chr6:161695063..161696658,2	K562	blood:
4	chr6:161588978..161591951-chr6:161662641..161667563,4	K562	blood:
5	chr6:161590074..161592745-chr6:161601272..161602964,2	K562	blood:
6	chr6:161413545..161416445-chr6:161589800..161592180,2	K562	blood:
7	chr6:161560244..161562389-chr6:161588061..161590978,2	K562	blood:
8	chr6:161573780..161576255-chr6:161588186..161590338,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000026652	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11753162	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754766	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892229	0.81[ASN][1000 genomes]
rs2018762	0.81[ASN][1000 genomes]
rs2064718	0.84[ASN][1000 genomes]
rs2314375	0.81[ASN][1000 genomes]
rs3798920	0.81[ASN][1000 genomes]
rs3798922	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3798923	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3798924	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3798925	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61552758	0.81[ASN][1000 genomes]
rs6924597	0.84[ASN][1000 genomes]
rs73786014	0.81[ASN][1000 genomes]
rs73786018	0.81[AMR][1000 genomes]
rs7775897	0.84[ASN][1000 genomes]
rs940520	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161548400-161590800	Weak transcription	Fetal Thymus	thymus
2	chr6:161554000-161591000	Weak transcription	Colonic Mucosa	Colon
3	chr6:161574600-161592400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:161575600-161591000	Weak transcription	Gastric	stomach
5	chr6:161575600-161593400	Weak transcription	Esophagus	oesophagus
6	chr6:161579200-161590200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:161580600-161590800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr6:161582600-161591000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:161583800-161590800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:161584200-161591200	Weak transcription	Thymus	Thymus
11	chr6:161584200-161591800	Weak transcription	Right Ventricle	heart
12	chr6:161584800-161591200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:161585000-161591600	Weak transcription	Fetal Intestine Small	intestine
14	chr6:161585600-161591200	Weak transcription	Ovary	ovary
15	chr6:161585600-161626000	Weak transcription	Right Atrium	heart
16	chr6:161586400-161591000	Weak transcription	Fetal Kidney	kidney
17	chr6:161586600-161591000	Weak transcription	Lung	lung
18	chr6:161586800-161591200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr6:161587000-161592200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:161587200-161590600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr6:161587400-161590600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:161587400-161592000	Enhancers	H1 Cell Line	embryonic stem cell
23	chr6:161587400-161599600	Weak transcription	Spleen	Spleen
24	chr6:161587400-161607000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:161587600-161590200	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr6:161587600-161590400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:161587600-161590400	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr6:161587600-161590400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:161587600-161590800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:161587600-161591200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr6:161587600-161592200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:161587600-161594000	Weak transcription	Aorta	Aorta
33	chr6:161587800-161590800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr6:161587800-161592000	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr6:161587800-161592200	Enhancers	Brain Hippocampus Middle	brain
36	chr6:161587800-161592400	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr6:161588000-161599800	Weak transcription	Primary T cells from cord blood	blood
38	chr6:161588200-161591600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:161588600-161591400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr6:161588600-161592200	Enhancers	Brain Substantia Nigra	brain
41	chr6:161588600-161592600	Enhancers	Brain Cingulate Gyrus	brain
42	chr6:161588800-161591400	Enhancers	NH-A	brain
43	chr6:161588800-161591800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr6:161589000-161592000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:161589200-161590200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr6:161589200-161590200	Enhancers	HSMM	muscle
47	chr6:161589200-161590400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr6:161589200-161590400	Enhancers	HMEC	breast
49	chr6:161589200-161591000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr6:161589200-161591200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links