Variant report

Variant	rs11753162
Chromosome Location	chr6:161592171-161592172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161590670..161592878-chr6:161605980..161608609,2	MCF-7	breast:
2	chr6:161590079..161592412-chr6:161674654..161677002,2	K562	blood:
3	chr6:161590074..161592745-chr6:161601272..161602964,2	K562	blood:
4	chr6:161413545..161416445-chr6:161589800..161592180,2	K562	blood:
5	chr6:161591767..161595162-chr6:161620326..161624402,3	K562	blood:
6	chr6:161410889..161414206-chr6:161590814..161593472,3	K562	blood:

Variant related genes	Relation type
ENSG00000085511	Chromatin interaction
ENSG00000272841	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11751856	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754766	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892229	0.84[ASW][hapmap];1.00[CHD][hapmap];0.85[LWK][hapmap];0.81[ASN][1000 genomes]
rs2018762	0.81[ASN][1000 genomes]
rs2064718	0.84[ASN][1000 genomes]
rs2314375	0.81[ASN][1000 genomes]
rs3798920	1.00[CHD][hapmap];0.81[ASN][1000 genomes]
rs3798922	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3798923	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3798924	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3798925	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61552758	0.81[ASN][1000 genomes]
rs6924597	0.84[ASN][1000 genomes]
rs73786014	0.81[ASN][1000 genomes]
rs73786018	0.81[AMR][1000 genomes]
rs7775897	0.84[ASN][1000 genomes]
rs9355340	1.00[YRI][hapmap]
rs940520	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv949397	chr6:161592100-161812932	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2752091	chr6:161592100-161855785	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161574600-161592400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:161575600-161593400	Weak transcription	Esophagus	oesophagus
3	chr6:161585600-161626000	Weak transcription	Right Atrium	heart
4	chr6:161587000-161592200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:161587400-161599600	Weak transcription	Spleen	Spleen
6	chr6:161587400-161607000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:161587600-161592200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:161587600-161594000	Weak transcription	Aorta	Aorta
9	chr6:161587800-161592200	Enhancers	Brain Hippocampus Middle	brain
10	chr6:161587800-161592400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:161588000-161599800	Weak transcription	Primary T cells from cord blood	blood
12	chr6:161588600-161592200	Enhancers	Brain Substantia Nigra	brain
13	chr6:161588600-161592600	Enhancers	Brain Cingulate Gyrus	brain
14	chr6:161589200-161592200	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr6:161589200-161592200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:161589400-161592200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:161589400-161592200	Enhancers	Brain Anterior Caudate	brain
18	chr6:161589400-161592200	Enhancers	Fetal Muscle Leg	muscle
19	chr6:161589400-161592600	Enhancers	Brain Angular Gyrus	brain
20	chr6:161589600-161592600	Enhancers	Primary B cells from peripheral blood	blood
21	chr6:161589800-161592400	Enhancers	Brain Germinal Matrix	brain
22	chr6:161590000-161592200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:161590000-161593200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:161590000-161598800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr6:161590000-161611600	Weak transcription	HSMMtube	muscle
26	chr6:161590200-161607600	Weak transcription	HSMM	muscle
27	chr6:161590400-161599000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:161590400-161606800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:161590800-161592200	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr6:161591000-161592200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:161591000-161592200	Flanking Active TSS	GM12878-XiMat	blood
32	chr6:161591000-161607000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:161591400-161592200	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr6:161591400-161592400	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr6:161591400-161592600	Enhancers	Primary B cells from cord blood	blood
36	chr6:161591400-161599200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr6:161591400-161626200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr6:161591600-161592200	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr6:161591600-161592600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr6:161591600-161593400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:161591600-161615400	Weak transcription	Fetal Heart	heart
42	chr6:161591800-161592200	Weak transcription	NHLF	lung
43	chr6:161591800-161592400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr6:161591800-161593600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr6:161591800-161599200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr6:161591800-161607000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr6:161592000-161592200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr6:161592000-161592600	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr6:161592000-161593000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr6:161592000-161593200	Weak transcription	Lung	lung

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