Variant report

Variant	rs3798922
Chromosome Location	chr6:161593188-161593189
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161591767..161595162-chr6:161620326..161624402,3	K562	blood:
2	chr6:161410889..161414206-chr6:161590814..161593472,3	K562	blood:

Variant related genes	Relation type
ENSG00000085511	Chromatin interaction
ENSG00000272841	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11751856	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753162	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754766	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892229	0.81[ASN][1000 genomes]
rs2018762	0.81[ASN][1000 genomes]
rs2064718	0.84[ASN][1000 genomes]
rs2314375	0.81[ASN][1000 genomes]
rs3798920	0.81[ASN][1000 genomes]
rs3798923	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3798924	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3798925	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61552758	0.81[ASN][1000 genomes]
rs6924597	0.84[ASN][1000 genomes]
rs73786014	0.81[ASN][1000 genomes]
rs73786018	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7775897	0.84[ASN][1000 genomes]
rs940520	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv949397	chr6:161592100-161812932	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2752091	chr6:161592100-161855785	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161575600-161593400	Weak transcription	Esophagus	oesophagus
2	chr6:161585600-161626000	Weak transcription	Right Atrium	heart
3	chr6:161587400-161599600	Weak transcription	Spleen	Spleen
4	chr6:161587400-161607000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:161587600-161594000	Weak transcription	Aorta	Aorta
6	chr6:161588000-161599800	Weak transcription	Primary T cells from cord blood	blood
7	chr6:161590000-161593200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:161590000-161598800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:161590000-161611600	Weak transcription	HSMMtube	muscle
10	chr6:161590200-161607600	Weak transcription	HSMM	muscle
11	chr6:161590400-161599000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:161590400-161606800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:161591000-161607000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:161591400-161599200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr6:161591400-161626200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr6:161591600-161593400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:161591600-161615400	Weak transcription	Fetal Heart	heart
18	chr6:161591800-161593600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:161591800-161599200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr6:161591800-161607000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:161592000-161593200	Weak transcription	Lung	lung
22	chr6:161592000-161598600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr6:161592000-161599800	Weak transcription	Ovary	ovary
24	chr6:161592000-161607000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:161592000-161609600	Weak transcription	Fetal Brain Male	brain
26	chr6:161592200-161593200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr6:161592200-161593400	Weak transcription	Fetal Muscle Leg	muscle
28	chr6:161592200-161597400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr6:161592200-161599200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:161592200-161602200	Weak transcription	Brain Anterior Caudate	brain
31	chr6:161592200-161606600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:161592600-161598800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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