Variant report

Variant	rs9457992
Chromosome Location	chr6:161100785-161100786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1998043	0.89[EUR][1000 genomes]
rs1998044	0.82[EUR][1000 genomes]
rs1998045	0.88[EUR][1000 genomes]
rs2115868	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs5014650	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7758766	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9456575	0.86[EUR][1000 genomes]
rs9457991	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9457993	0.97[EUR][1000 genomes]
rs9457997	0.91[EUR][1000 genomes]
rs9457998	0.88[EUR][1000 genomes]
rs9458002	0.86[EUR][1000 genomes]
rs9458003	0.86[EUR][1000 genomes]
rs9458004	0.86[EUR][1000 genomes]
rs9458009	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv605005	chr6:161069941-161152449	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161099600-161100800	Bivalent Enhancer	NHEK	skin
2	chr6:161099800-161100800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
3	chr6:161100000-161100800	Bivalent/Poised TSS	Fetal Brain Female	brain
4	chr6:161100200-161100800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
5	chr6:161100400-161100800	Active TSS	HepG2	liver
6	chr6:161100600-161100800	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr6:161100600-161100800	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:161100600-161100800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:161100600-161100800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
10	chr6:161100600-161100800	Bivalent Enhancer	Fetal Intestine Small	intestine
11	chr6:161100600-161100800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr6:161100600-161100800	Active TSS	Pancreas	Pancrea
13	chr6:161100600-161101000	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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